Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NMH04_RS07055 Genome accession   NZ_CP101609
Coordinates   1389234..1389695 (-) Length   153 a.a.
NCBI ID   WP_007498684.1    Uniprot ID   A0A9X0FXQ0
Organism   Bacillus altitudinis strain 47     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384234..1394695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMH04_RS07030 (NMH04_07005) - 1384638..1385522 (+) 885 WP_056704830.1 cation diffusion facilitator family transporter -
  NMH04_RS07035 (NMH04_07010) - 1385586..1385741 (-) 156 WP_155720694.1 hypothetical protein -
  NMH04_RS07040 (NMH04_07015) - 1386039..1386578 (+) 540 WP_039169112.1 RDD family protein -
  NMH04_RS07045 (NMH04_07020) - 1386703..1388013 (+) 1311 WP_205831395.1 MFS transporter -
  NMH04_RS07050 (NMH04_07025) - 1388087..1388995 (+) 909 WP_024719666.1 chemotaxis protein -
  NMH04_RS07055 (NMH04_07030) kre 1389234..1389695 (-) 462 WP_007498684.1 YkyB family protein Regulator
  NMH04_RS07060 (NMH04_07035) - 1390173..1390388 (-) 216 WP_008348016.1 hypothetical protein -
  NMH04_RS07065 (NMH04_07040) - 1390556..1390732 (+) 177 WP_162835673.1 hypothetical protein -
  NMH04_RS07070 (NMH04_07045) - 1390958..1392235 (-) 1278 WP_008348012.1 MFS transporter -
  NMH04_RS07075 (NMH04_07050) - 1392309..1392806 (-) 498 WP_073414335.1 L,D-transpeptidase family protein -
  NMH04_RS07080 (NMH04_07055) - 1392963..1393820 (-) 858 WP_100324937.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17739.31 Da        Isoelectric Point: 10.2617

>NTDB_id=710785 NMH04_RS07055 WP_007498684.1 1389234..1389695(-) (kre) [Bacillus altitudinis strain 47]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=710785 NMH04_RS07055 WP_007498684.1 1389234..1389695(-) (kre) [Bacillus altitudinis strain 47]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATCGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAATCGAGCAAAACAAATTCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771