Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   G6M15_RS01965 Genome accession   NZ_CP116692
Coordinates   397443..399275 (-) Length   610 a.a.
NCBI ID   WP_174007623.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain A74a     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 392443..404275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M15_RS01940 (G6M15_01940) - 393303..393542 (+) 240 WP_006313175.1 DUF4170 domain-containing protein -
  G6M15_RS01945 (G6M15_01945) waaA 393757..395079 (+) 1323 WP_174007542.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  G6M15_RS01950 (G6M15_01950) - 395073..395810 (+) 738 WP_174007545.1 HAD family hydrolase -
  G6M15_RS01955 (G6M15_01955) lpxK 396015..397061 (+) 1047 WP_174007547.1 tetraacyldisaccharide 4'-kinase -
  G6M15_RS01960 (G6M15_01960) - 397070..397291 (-) 222 WP_174007549.1 DUF2093 domain-containing protein -
  G6M15_RS01965 (G6M15_01965) hexB 397443..399275 (-) 1833 WP_174007623.1 DNA mismatch repair endonuclease MutL Machinery gene
  G6M15_RS01970 (G6M15_01970) - 399685..401304 (+) 1620 WP_174007624.1 response regulator -
  G6M15_RS01975 (G6M15_01975) - 401391..402743 (+) 1353 WP_174007551.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  G6M15_RS01980 (G6M15_01980) - 402930..403817 (-) 888 WP_174007553.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 65652.53 Da        Isoelectric Point: 6.0814

>NTDB_id=710771 G6M15_RS01965 WP_174007623.1 397443..399275(-) (hexB) [Agrobacterium tumefaciens strain A74a]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPDDLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGYAGLPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSMMASAPWSAATSPSRPLAVSGDMQFAEAVQSRFSDITMPTARA
EPRDAYEASASVSPEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDL
PEEDCDRLMDHAPGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGS
VRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=710771 G6M15_RS01965 WP_174007623.1 397443..399275(-) (hexB) [Agrobacterium tumefaciens strain A74a]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCGTCCAGCGCCAC
GAAGGAACTTGTCGAAAACGCCATCGACGCGGGCGCGACCCGCATCGAGATCGCCACGGCGGGCGGCGGCAAAGGGCTGG
TGCGGATTACCGATAACGGCTCCGGCATGTCACCCGACGATCTGGAGCTCGCGGTCAGGCGTCATTGCACCTCGAAAATT
TCCACGACACTGGATGACATCCGCACGCTCGGATTTCGCGGGGAGGCCCTGCCCTCCATCGGCTCGGTCGCCAAGCTGAC
GATCACGAGCCGGCAACAGGGGGCAGAACAGGGTTCGGTGATTTCAGTCACCGGCGGCAAGGTATCGGACGTGCGGCCCG
CAGCTTCGAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTTTTCGCCACCCCTGCGCGGCTGAAATTCCTGAAGACG
GAACGGGCGGAGGCGGCCGCCATCACCGAAGTCGTCAAGCGGATGGCGATTGCCTTTCCGCATATCCGCTTCGTGCTCTC
GGGAACCGACCGTTCGACGCTCGAAATTCCGTCGACCGGCGACGATCATCTCGCCCGCATGGCGCAGATCCTTGGCGCGG
AGTTCAAGGATAATGCGATCGAAATCGATGCCGGGCGCGAGGACGTGACGCTGACCGGTTACGCTGGCTTGCCGACCTTC
AACCGTGGAAACTCGGCGCATCAATATGTCTTCGTTAATGGCCGCCCGGTGCAGGACAAGCTACTTTTATCGGCCATTCG
CGGTGCCTATGCCGAAACCGTGCCGCATGGGCGCTATCCGGTCGCGGTGCTGTCCATCACGCTCGACCCGGCCTTTGTGG
ATGTGAACGTGCATCCGGCCAAATCCGACGTGCGGTTTCGCGATCCCGGCCTCATTCGCGGGCTGATCGTCGGTGCAATC
CGCCAGGCGCTGACGCGCGACGGCGACAGGGCGGCGACGACGGGCGCCAGCCAGATGATGAACGCCTTCCGCCCCGGCTA
CAGCCCGTCCGGACTCCGGCCCTCGCCTTCCATGATGGCTTCCGCACCATGGTCCGCAGCAACCTCGCCGTCGCGGCCGC
TCGCCGTTTCCGGGGACATGCAATTTGCCGAAGCGGTGCAATCGCGTTTTTCCGACATCACCATGCCGACCGCACGGGCG
GAACCACGCGATGCTTACGAGGCTTCCGCAAGCGTTTCGCCGGAGCCGGTGCTTTATCCGCTTGGAGCGGCACGGGCGCA
GCTGCATGAGAACTACATCATCGCGCAGACGGAAAACGGCCTCGTCATCGTCGACCAGCATGCCGCACATGAGCGGCTGG
TGTTCGAGGAAATGCGCAATGCCCTGCATTCGAGGCGGCCACCGTCGCAGGTGCTGCTCATCCCTGAAATCATCGACCTT
CCCGAGGAAGATTGCGACCGGCTGATGGATCACGCGCCCGGTTTCGACGCGCTGGGGCTTGTCATCGAACGTTTCGGGCC
GGGCGCAATCGCGGTGCGGGAAACGCCAGCCATGCTCGGCGAAGTCAACGTGCAGGGGCTGGTGCGCCAGCTAGCCGATG
AGATCGCCGAATGGGACGCCGCTTCCACGCTTGCCAACAAGCTGGAATATGTCGCCGCGACCATGGCCTGCCACGGCTCG
GTGCGCTCCGGCCGGCGCATGCGGCCGGAGGAGATGAACGCGCTTCTGCGGCAGATGGAAAACACGCCGGGTTCGGGCCA
ATGCAATCACGGCCGGCCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)

MutL C terminal dimerisation domain (MutL_C)

(420-566)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.52

100

0.366