Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NMH04_RS01955 Genome accession   NZ_CP101609
Coordinates   370145..370573 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain 47     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365145..375573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMH04_RS01925 (NMH04_01925) - 365289..365618 (+) 330 WP_017366586.1 YckD family protein -
  NMH04_RS01930 (NMH04_01930) - 365665..366429 (-) 765 WP_039166305.1 MBL fold metallo-hydrolase -
  NMH04_RS01935 (NMH04_01935) - 366545..366964 (+) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  NMH04_RS01940 (NMH04_01940) - 366989..367795 (+) 807 WP_024718957.1 aminoglycoside N(3)-acetyltransferase -
  NMH04_RS01945 (NMH04_01945) comJ 367797..368183 (-) 387 WP_039166300.1 competence protein ComJ -
  NMH04_RS01950 (NMH04_01950) - 368321..370018 (-) 1698 WP_045034599.1 methyl-accepting chemotaxis protein -
  NMH04_RS01955 (NMH04_01955) nucA/comI 370145..370573 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NMH04_RS01960 (NMH04_01960) - 370941..373010 (+) 2070 WP_061417866.1 hydantoinase/oxoprolinase family protein -
  NMH04_RS01965 (NMH04_01965) - 373000..374985 (+) 1986 WP_255816856.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=710766 NMH04_RS01955 WP_007498233.1 370145..370573(-) (nucA/comI) [Bacillus altitudinis strain 47]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=710766 NMH04_RS01955 WP_007498233.1 370145..370573(-) (nucA/comI) [Bacillus altitudinis strain 47]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514