Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G6L31_RS12515 Genome accession   NZ_CP116688
Coordinates   2576753..2578561 (+) Length   602 a.a.
NCBI ID   WP_173985970.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain LMG 292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2571753..2583561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L31_RS25245 - 2575406..2576086 (-) 681 Protein_2457 IS3 family transposase -
  G6L31_RS25250 - 2576221..2576364 (-) 144 WP_420043061.1 helix-turn-helix domain-containing protein -
  G6L31_RS25255 - 2576395..2576577 (-) 183 WP_420043062.1 transposase -
  G6L31_RS12515 (G6L31_012515) recQ 2576753..2578561 (+) 1809 WP_173985970.1 DNA helicase RecQ Machinery gene
  G6L31_RS12520 (G6L31_012520) - 2578610..2579842 (-) 1233 WP_080826950.1 ROK family transcriptional regulator -
  G6L31_RS12525 (G6L31_012525) - 2580107..2581129 (+) 1023 WP_080826949.1 sugar ABC transporter substrate-binding protein -
  G6L31_RS12530 (G6L31_012530) - 2581353..2582435 (+) 1083 WP_080826948.1 ABC transporter permease -
  G6L31_RS12535 (G6L31_012535) - 2582435..2583217 (+) 783 WP_080826947.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 66821.40 Da        Isoelectric Point: 6.5688

>NTDB_id=710762 G6L31_RS12515 WP_173985970.1 2576753..2578561(+) (recQ) [Agrobacterium tumefaciens strain LMG 292]
MNADPLNILKTVYGYDAFRGRQGEIIRHVVAGNDAFVLMPTGGGKSLCYQIPALARKGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWQAMRAGHVDILYAAPETLLKPEVLEALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDML
IERFPNVPRMALTATADEPTRNEILGHLAIDEGDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLNGRETESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETAGCRRQVLLSYFGDRCEPCGNCDTCAAPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVISVLLGAQDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRLIEVDLSG
HGGLSISEDGRRFLREKPSLMLRIPSAPRAARRETPRNSTSTALPAADRGLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAARPASAKEMAQIAGVGETKLERYGPAFLDTIIQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=710762 G6L31_RS12515 WP_173985970.1 2576753..2578561(+) (recQ) [Agrobacterium tumefaciens strain LMG 292]
GTGAACGCCGATCCCTTAAATATCCTCAAGACCGTCTATGGCTATGATGCGTTCCGCGGACGGCAGGGCGAAATCATCCG
GCATGTTGTGGCAGGCAACGATGCATTCGTTCTGATGCCGACCGGCGGAGGAAAGTCGCTGTGTTATCAGATCCCGGCGC
TCGCCCGCAAAGGCATGGGGCTGATCGTCTCGCCGCTGATCGCGCTCATGGTCGATCAGGTGGCGGCGCTGCGTCAGGCG
GGCGTGCGGGCTGAGGCGCTCAACTCGGACCTTTCTCCCGAAGAACGACGTGCGCTCTGGCAAGCGATGCGCGCCGGTCA
TGTCGATATTCTTTATGCCGCGCCGGAAACTCTCCTCAAACCGGAGGTTCTCGAGGCGCTTCAATCCATCGATCTGTCGC
TGATCGCGGTCGATGAGGCCCATTGCCTGTCGCAATGGGGGCATGATTTCCGGCCGCCCTATCGCCAGCTCGATATGTTG
ATCGAGCGTTTTCCAAATGTACCGAGGATGGCGCTGACGGCGACGGCTGACGAACCCACCCGTAACGAGATTCTCGGCCA
TCTCGCTATCGATGAAGGTGATGCCTTCATCGCCGGCTTCGACCGCCCCAATATCCGCTATGCGATCATGGAGAAGGACA
ATCCCCGCGCCCAGCTGAAACGTTTTCTCAATGGCCGGGAGACCGAAAGCGGCATCGTTTATTGCCTGTCGAAACGCAAG
GTGGATGAAACGGCGGCATGGCTGCGGGAAGAGGGGCGTGACGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
CGAGGAAAACCAGACCCGCTTCCAGCACGGGGAAGCAGTCATCATCGTAGCGACGGTTGCCTTCGGTATGGGCATCGACA
AGCCGGATGTGCGTTTCGTCGTTCATATCGATCTACCCGGAAGCATCGAGGCCTATTATCAGGAAACCGGCCGAGCCGGG
CGCGATGGCCTGCCGTCTGACGTGCTGATGCTCTATGGTTATGAAGATATTGCCCTGCGCAACCGCTTCATCGAGGAGTC
GGATGCTGCGGACCAGCGCAAATATATGGAACGGCAGAAGCTCGATGCGCTGCTTGGCCTTGCGGAAACCGCGGGCTGCC
GGAGGCAGGTTCTGCTCTCCTATTTCGGTGACCGGTGCGAGCCCTGTGGCAACTGTGATACGTGCGCGGCGCCGCCTGAT
CTGTTCGATGGGGCCATAGCCGCACAGAAGCTGCTTTCCTGCATCTACCGCACGGGAGAACGTTTCGGGCAGGCCTATGT
CATCAGCGTATTGCTGGGCGCGCAGGATGAGCGGATTTCCCGCTTCGGGCACGATCGCATCACCACTTACGGGATCGGCA
AGGAACACGACAATCGCACCTGGCGGGCCATTTTGCGCCAGCTGGTGGCGTTACGCCTGATCGAGGTGGATCTGTCCGGG
CATGGCGGATTGTCCATTTCAGAGGACGGGAGACGGTTCCTGCGCGAAAAGCCTTCCCTGATGCTGAGAATCCCGTCCGC
GCCCCGTGCGGCACGGCGGGAGACGCCACGCAACTCGACATCGACGGCTCTGCCGGCGGCCGACCGTGGCCTCTTTGAGG
CGCTGCGTGCCAAGCGCATGGAAATTGCCCGCGCGCAGAACGTTCCACCCTATGTGATCTTTCACGACAAGACCCTCATT
GAACTCGCCGCTGCAAGACCGGCCTCTGCGAAGGAAATGGCGCAGATCGCCGGTGTTGGGGAAACCAAGCTGGAGCGGTA
CGGCCCCGCCTTTCTGGACACGATAATCCAGCATGCCGCTGGCGAATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

RQC domain (RQC)

(398-509)

DEAD/DEAH box helicase (DEAD)

(22-177)

HRDC domain (HRDC)

(529-595)

Helicase conserved C-terminal domain (Helicase_C)

(219-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.856

99.169

0.375