Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NMH04_RS00260 Genome accession   NZ_CP101609
Coordinates   48631..48921 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 47     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43631..53921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMH04_RS00220 (NMH04_00220) - 43664..43993 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  NMH04_RS00225 (NMH04_00225) - 44006..44446 (+) 441 WP_008341898.1 YaaR family protein -
  NMH04_RS00230 (NMH04_00230) holB 44458..45447 (+) 990 WP_041506542.1 DNA polymerase III subunit delta' -
  NMH04_RS00235 (NMH04_00235) - 45450..46277 (+) 828 WP_024719352.1 stage 0 sporulation family protein -
  NMH04_RS00240 (NMH04_00240) yabA 46292..46645 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  NMH04_RS00245 (NMH04_00245) - 46701..47444 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NMH04_RS00250 (NMH04_00250) - 47431..47730 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  NMH04_RS00255 (NMH04_00255) rsmI 47705..48586 (+) 882 WP_039170319.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NMH04_RS00260 (NMH04_00260) abrB 48631..48921 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NMH04_RS00265 (NMH04_00265) metG 49441..51441 (+) 2001 WP_173407669.1 methionine--tRNA ligase -
  NMH04_RS00270 (NMH04_00270) - 51523..52290 (+) 768 WP_159145302.1 TatD family hydrolase -
  NMH04_RS00275 (NMH04_00275) - 52535..53737 (+) 1203 WP_173407670.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=710762 NMH04_RS00260 WP_087975202.1 48631..48921(-) (abrB) [Bacillus altitudinis strain 47]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=710762 NMH04_RS00260 WP_087975202.1 48631..48921(-) (abrB) [Bacillus altitudinis strain 47]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAATGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938