Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   G6L31_RS08490 Genome accession   NZ_CP116688
Coordinates   1699077..1700750 (-) Length   557 a.a.
NCBI ID   WP_173987270.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain LMG 292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1694077..1705750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L31_RS08470 (G6L31_008470) - 1694662..1695195 (+) 534 WP_173987266.1 GNAT family N-acetyltransferase -
  G6L31_RS08475 (G6L31_008475) - 1695200..1696093 (-) 894 WP_173987267.1 aminoglycoside phosphotransferase family protein -
  G6L31_RS08480 (G6L31_008480) ligA 1696159..1698333 (-) 2175 WP_173987268.1 NAD-dependent DNA ligase LigA -
  G6L31_RS08485 (G6L31_008485) - 1698466..1699080 (+) 615 WP_173987269.1 LysE family translocator -
  G6L31_RS08490 (G6L31_008490) recN 1699077..1700750 (-) 1674 WP_173987270.1 DNA repair protein RecN Machinery gene
  G6L31_RS08495 (G6L31_008495) - 1700766..1701632 (-) 867 WP_080824702.1 outer membrane protein assembly factor BamD -
  G6L31_RS08500 (G6L31_008500) lpxC 1701866..1702822 (-) 957 WP_080824701.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G6L31_RS08505 (G6L31_008505) ftsZ 1703093..1704847 (-) 1755 WP_080824700.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 60220.03 Da        Isoelectric Point: 4.9177

>NTDB_id=710750 G6L31_RS08490 WP_173987270.1 1699077..1700750(-) (recN) [Agrobacterium tumefaciens strain LMG 292]
MLVQLSIRDIVLIERLDLSFEAGLSVLTGETGAGKSILLDSLSLALGGRGDGGLVRHGEDKGQVTATFEVPNDHPTRLLL
RENGLDDDGDLIFRRVQSADGRTKAYVNDQAVSVQMMRQLGQMLVEIHGQHDDRALVDTDAHRTLLDAFAGLSDEARTVQ
GLYRTWRDADRALKTHRAKVEAAAREADYLRSSVEELETLSPRDGEEDELAERRAVMQKSERIAGDIAEASEFLNGNASP
VPVIASMMRRLERKSHEAPGLLEDTVQLLDAALENLSNAQMEVEAALRRTEFDPRELERVEERLFALRAAGRKYNVAVPD
LPALAEKMVADLADLDAGEEKLGKLEANLGVVKADFDRAAQSLSEKRRNAAEALSGAVMAELPALKLERARFTVEVTSDP
EQATADGIDTVEFHVQTNPGTRPGPIMKVASGGELSRFLLALKVALADRGSAPTLVFDEIDTGVGGAVADAIGQRLRRLS
KTVQVLSVTHAPQVAARAATHLLISKGPSGDGTERIATRVATMEPKHRTEEIARMLAGASVTDEARAAAARLLAAKD

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=710750 G6L31_RS08490 WP_173987270.1 1699077..1700750(-) (recN) [Agrobacterium tumefaciens strain LMG 292]
ATGCTGGTCCAGCTCTCGATACGCGACATCGTCCTGATTGAAAGGCTCGACCTCAGTTTTGAGGCGGGCCTTTCCGTATT
GACGGGCGAAACGGGCGCCGGCAAATCCATCCTGCTTGACAGTCTTTCGCTTGCACTTGGCGGTCGTGGTGATGGCGGCC
TTGTGCGCCATGGTGAAGACAAGGGGCAGGTGACTGCCACTTTCGAAGTCCCGAACGATCATCCCACCCGGCTTCTCCTG
CGCGAAAACGGCCTTGATGACGATGGCGACCTTATTTTCCGCCGGGTACAATCCGCTGACGGGCGAACCAAGGCGTACGT
CAACGATCAGGCCGTGAGCGTGCAGATGATGCGCCAGCTCGGGCAGATGCTGGTTGAAATTCACGGCCAGCATGACGACC
GCGCGCTTGTCGATACCGACGCCCATCGCACCCTGCTTGATGCCTTTGCCGGGTTGAGCGATGAGGCGCGCACCGTTCAG
GGCCTCTACCGCACCTGGAGGGACGCTGACCGTGCCCTGAAGACCCACCGGGCCAAGGTGGAGGCGGCGGCGCGCGAGGC
GGATTACCTGCGGTCTTCCGTCGAGGAGCTGGAAACCCTCTCACCGCGCGACGGTGAAGAGGATGAGCTGGCCGAGCGCC
GGGCGGTGATGCAGAAATCCGAACGCATTGCCGGCGATATTGCCGAAGCCAGCGAATTCCTGAATGGCAATGCTTCGCCC
GTGCCTGTCATTGCCTCAATGATGCGCCGGCTGGAGCGCAAAAGCCACGAAGCGCCCGGTCTTCTGGAAGATACCGTACA
ATTGCTGGATGCTGCGCTTGAGAACCTTTCCAATGCGCAGATGGAAGTGGAGGCGGCGCTGCGCCGCACCGAATTCGATC
CGCGTGAGCTGGAGCGCGTGGAAGAACGGTTGTTCGCCCTGCGCGCTGCCGGCCGCAAATATAATGTTGCCGTGCCTGAC
CTGCCGGCGCTTGCCGAAAAAATGGTGGCCGATCTCGCCGATCTCGATGCCGGTGAAGAAAAGCTCGGCAAGCTCGAGGC
CAATCTCGGTGTGGTGAAGGCCGATTTCGACCGGGCCGCCCAATCGCTTTCCGAAAAGCGCCGCAACGCTGCGGAGGCGC
TATCGGGTGCCGTCATGGCCGAGCTTCCGGCGCTGAAGCTGGAGCGGGCGCGGTTTACCGTCGAAGTGACGTCCGATCCC
GAGCAGGCGACGGCGGATGGTATCGATACGGTGGAATTCCACGTCCAGACCAATCCGGGCACACGGCCGGGGCCGATCAT
GAAAGTGGCGTCGGGCGGCGAATTGTCCCGCTTCCTGCTGGCCCTGAAAGTGGCGCTGGCGGATCGCGGTTCGGCACCGA
CCCTGGTGTTCGATGAAATCGATACGGGCGTCGGCGGCGCGGTGGCAGATGCCATCGGCCAGCGGCTACGCCGCCTGTCG
AAGACCGTGCAAGTTTTGTCCGTCACACATGCGCCGCAGGTAGCGGCACGGGCGGCGACCCATCTTCTCATTTCCAAAGG
CCCCTCCGGCGACGGCACCGAACGCATCGCCACGCGTGTGGCGACGATGGAACCCAAACACCGCACCGAAGAAATCGCCC
GCATGCTGGCCGGGGCTTCTGTGACGGATGAGGCGCGGGCTGCGGCCGCACGCCTCCTTGCCGCCAAGGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(14-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

34.768

100

0.363