Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J70_RS00275 Genome accession   NZ_AP018774
Coordinates   57371..57883 (-) Length   170 a.a.
NCBI ID   WP_110439958.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-3 isolate 13H42     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52371..62883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J70_RS00260 (CHBNIII3_00520) comQ 55692..55979 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  K6J70_RS00265 (CHBNIII3_00530) comP 55972..56655 (-) 684 WP_038440112.1 DUF2572 family protein Machinery gene
  K6J70_RS00270 (CHBNIII3_00540) comO 56655..57371 (-) 717 WP_065245143.1 type II secretion system protein J Machinery gene
  K6J70_RS00275 (CHBNIII3_00550) comN 57371..57883 (-) 513 WP_110439958.1 type II secretion system protein Machinery gene
  K6J70_RS00280 (CHBNIII3_00560) suhB 58083..58886 (+) 804 WP_005669608.1 inositol-1-monophosphatase -
  K6J70_RS00285 (CHBNIII3_00570) nrfE 58995..60902 (+) 1908 WP_110439959.1 heme lyase NrfEFG subunit NrfE -
  K6J70_RS00290 (CHBNIII3_00580) - 60902..61432 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -
  K6J70_RS00295 (CHBNIII3_00590) nrfF 61429..62583 (+) 1155 WP_110439960.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19917.22 Da        Isoelectric Point: 8.9563

>NTDB_id=71057 K6J70_RS00275 WP_110439958.1 57371..57883(-) (comN) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MQKGMTLVELLIGLAIISILLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHYIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=71057 K6J70_RS00275 WP_110439958.1 57371..57883(-) (comN) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTCTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATTATATTTATCCGAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment