Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   K6J70_RS00260 Genome accession   NZ_AP018774
Coordinates   55692..55979 (-) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-3 isolate 13H42     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50692..60979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J70_RS00250 (CHBNIII3_00500) nrdR 51777..52226 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J70_RS00255 (CHBNIII3_00510) recC 52281..55646 (-) 3366 WP_110439956.1 exodeoxyribonuclease V subunit gamma -
  K6J70_RS00260 (CHBNIII3_00520) comQ 55692..55979 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  K6J70_RS00265 (CHBNIII3_00530) comP 55972..56655 (-) 684 WP_038440112.1 DUF2572 family protein Machinery gene
  K6J70_RS00270 (CHBNIII3_00540) comO 56655..57371 (-) 717 WP_065245143.1 type II secretion system protein J Machinery gene
  K6J70_RS00275 (CHBNIII3_00550) comN 57371..57883 (-) 513 WP_110439958.1 type II secretion system protein Machinery gene
  K6J70_RS00280 (CHBNIII3_00560) suhB 58083..58886 (+) 804 WP_005669608.1 inositol-1-monophosphatase -
  K6J70_RS00285 (CHBNIII3_00570) nrfE 58995..60902 (+) 1908 WP_110439959.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=71054 K6J70_RS00260 WP_021034778.1 55692..55979(-) (comQ) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=71054 K6J70_RS00260 WP_021034778.1 55692..55979(-) (comQ) [Haemophilus influenzae strain CHBN-III-3 isolate 13H42]
ATGAATAAAGGAATGTCGCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment