Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   NY149_RS07760 Genome accession   NZ_CP116613
Coordinates   1783773..1784636 (-) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain HG1691old     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778773..1789636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY149_RS07735 (NY149_07735) - 1779032..1780249 (-) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  NY149_RS07740 (NY149_07740) - 1780252..1782207 (-) 1956 WP_271912078.1 LptF/LptG family permease -
  NY149_RS07745 (NY149_07745) rplI 1782483..1783022 (-) 540 WP_005874868.1 50S ribosomal protein L9 -
  NY149_RS07750 (NY149_07750) rpsR 1783047..1783319 (-) 273 WP_004585133.1 30S ribosomal protein S18 -
  NY149_RS07755 (NY149_07755) rpsF 1783323..1783676 (-) 354 WP_004585132.1 30S ribosomal protein S6 -
  NY149_RS07760 (NY149_07760) rpoS 1783773..1784636 (-) 864 WP_004585131.1 sigma-70 family RNA polymerase sigma factor Regulator
  NY149_RS07765 (NY149_07765) - 1784826..1786322 (-) 1497 WP_097530691.1 DegQ family serine endoprotease -
  NY149_RS07770 (NY149_07770) - 1786539..1786796 (-) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  NY149_RS11685 - 1787017..1787196 (+) 180 WP_370576211.1 DUF1661 domain-containing protein -
  NY149_RS07775 (NY149_07775) guaA 1787513..1789033 (+) 1521 WP_004585128.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=710506 NY149_RS07760 WP_004585131.1 1783773..1784636(-) (rpoS) [Porphyromonas gingivalis strain HG1691old]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=710506 NY149_RS07760 WP_004585131.1 1783773..1784636(-) (rpoS) [Porphyromonas gingivalis strain HG1691old]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAGGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366