Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   NY148_RS06520 Genome accession   NZ_CP116612
Coordinates   1511090..1511953 (-) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain A7436-C     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506090..1516953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY148_RS06495 (NY148_06495) - 1506349..1507566 (-) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  NY148_RS06500 (NY148_06500) - 1507569..1509524 (-) 1956 WP_005874872.1 LptF/LptG family permease -
  NY148_RS06505 (NY148_06505) rplI 1509800..1510339 (-) 540 WP_005874868.1 50S ribosomal protein L9 -
  NY148_RS06510 (NY148_06510) rpsR 1510364..1510636 (-) 273 WP_004585133.1 30S ribosomal protein S18 -
  NY148_RS06515 (NY148_06515) rpsF 1510640..1510993 (-) 354 WP_004585132.1 30S ribosomal protein S6 -
  NY148_RS06520 (NY148_06520) rpoS 1511090..1511953 (-) 864 WP_004585131.1 sigma-70 family RNA polymerase sigma factor Regulator
  NY148_RS06525 (NY148_06525) - 1512143..1513639 (-) 1497 WP_005874875.1 DegQ family serine endoprotease -
  NY148_RS06530 (NY148_06530) - 1513856..1514113 (-) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  NY148_RS06535 (NY148_06535) - 1514334..1514498 (+) 165 WP_236683460.1 DUF1661 domain-containing protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=710475 NY148_RS06520 WP_004585131.1 1511090..1511953(-) (rpoS) [Porphyromonas gingivalis strain A7436-C]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=710475 NY148_RS06520 WP_004585131.1 1511090..1511953(-) (rpoS) [Porphyromonas gingivalis strain A7436-C]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAAGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366