Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NNL28_RS02815 Genome accession   NZ_CP101530
Coordinates   586978..588645 (+) Length   555 a.a.
NCBI ID   WP_255820367.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain SNK-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581978..593645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNL28_RS02785 (NNL28_02785) folD 582360..583217 (+) 858 WP_255820362.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  NNL28_RS02790 (NNL28_02790) xseA 583210..584550 (+) 1341 WP_003705928.1 exodeoxyribonuclease VII large subunit -
  NNL28_RS02795 (NNL28_02795) - 584550..584777 (+) 228 WP_003705929.1 exodeoxyribonuclease VII small subunit -
  NNL28_RS02800 (NNL28_02800) - 584743..585660 (+) 918 WP_003709870.1 polyprenyl synthetase family protein -
  NNL28_RS02805 (NNL28_02805) - 585663..586490 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  NNL28_RS02810 (NNL28_02810) - 586515..586973 (+) 459 WP_003699854.1 arginine repressor -
  NNL28_RS02815 (NNL28_02815) recN 586978..588645 (+) 1668 WP_255820367.1 DNA repair protein RecN Machinery gene
  NNL28_RS02820 (NNL28_02820) lexA 588709..589329 (-) 621 WP_003705933.1 transcriptional repressor LexA -
  NNL28_RS02825 (NNL28_02825) - 589440..589730 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  NNL28_RS02830 (NNL28_02830) - 589857..590081 (+) 225 WP_003705934.1 YneF family protein -
  NNL28_RS02835 (NNL28_02835) yihA 590164..590754 (+) 591 WP_255820371.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NNL28_RS02840 (NNL28_02840) - 590772..591071 (+) 300 WP_003705935.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  NNL28_RS02845 (NNL28_02845) - 591176..592990 (+) 1815 WP_255820374.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63206.00 Da        Isoelectric Point: 4.8139

>NTDB_id=710435 NNL28_RS02815 WP_255820367.1 586978..588645(+) (recN) [Ligilactobacillus salivarius strain SNK-6]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIGEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDISDLSENLQEINTKISDAFYSLEDVARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHIRIVKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLEELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=710435 NNL28_RS02815 WP_255820367.1 586978..588645(+) (recN) [Ligilactobacillus salivarius strain SNK-6]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTACTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTAGCAACTTTACGAAAGGTAGGAGAAACATTAATAGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAATCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGGAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTAG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATATTTCAGATTTATCAGAAAATCTTCAAGAGAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGTCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAACGAAATAGAGGAAAGACTAGAGTTGATTCATCAATTGAAAAGAAAATATGGTGATACGATA
GAGGATATTTTGCATTATCATATTAGAATTGTAAAAGAATTAAGAGAAATGGAGAATGCGGAACAAAATTCAGAAAAGCA
AGAGAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTAGCAATAAAACTTTCGAAACAGCGGAAAAAAAGCGCTA
AAAAATTAGAAAAAATGATTCATGAACAATTAAGTGCATTATATATGGACAAAGCCGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTATATTCTAAAGGTATTGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGGATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAGGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTATTATATTTCAAA
ATCTGTTAACGATGGTAGAACAGAAACTTCATTAGAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACGTTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.902

100

0.494