Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NNL28_RS01935 Genome accession   NZ_CP101530
Coordinates   439131..440948 (+) Length   605 a.a.
NCBI ID   WP_255820202.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain SNK-6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 434131..445948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNL28_RS01920 (NNL28_01920) - 435562..437208 (+) 1647 WP_255820198.1 phosphoenolpyruvate carboxykinase (ATP) -
  NNL28_RS01925 (NNL28_01925) - 437312..438085 (+) 774 WP_255820199.1 adaptor protein MecA -
  NNL28_RS01930 (NNL28_01930) - 438134..439033 (+) 900 WP_161023073.1 competence protein CoiA -
  NNL28_RS01935 (NNL28_01935) pepF 439131..440948 (+) 1818 WP_255820202.1 oligoendopeptidase F Regulator
  NNL28_RS01940 (NNL28_01940) - 441038..441634 (-) 597 WP_003708303.1 ClpXP adapter SpxH family protein -
  NNL28_RS01945 (NNL28_01945) - 441811..442665 (+) 855 WP_003705786.1 phosphate ABC transporter substrate-binding protein -
  NNL28_RS01950 (NNL28_01950) pstC 442676..443593 (+) 918 WP_034983079.1 phosphate ABC transporter permease subunit PstC -
  NNL28_RS01955 (NNL28_01955) pstA 443593..444483 (+) 891 WP_003708300.1 phosphate ABC transporter permease PstA -
  NNL28_RS01960 (NNL28_01960) pstB 444488..445282 (+) 795 WP_003705788.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70372.61 Da        Isoelectric Point: 5.9800

>NTDB_id=710431 NNL28_RS01935 WP_255820202.1 439131..440948(+) (pepF) [Ligilactobacillus salivarius strain SNK-6]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDKVQNFRKLQGTMDQGSQRFLQIIENFLSINKKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNRKVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEALGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNNEKDILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLGLNKKYYGSDVISDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=710431 NNL28_RS01935 WP_255820202.1 439131..440948(+) (pepF) [Ligilactobacillus salivarius strain SNK-6]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTGTT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATAAAGTACAGAACTTCAGAAAATTACAAGGTACAA
TGGATCAAGGTAGTCAAAGATTTTTACAAATCATTGAAAATTTCTTAAGTATTAATAAGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGAAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTTTTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TTAGAAAGAAGATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TACAATTACATTCAAGCACAAATTGAAGCTAAAAAAGCACTTGAAGCATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACAATGAAAAAGATATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCGAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGGATTAAATAAGAAATATTATGGTAGTGATGTGATAAG
TGATCCTGAAATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCGGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(209-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

97.851

0.521