Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   BV187_RS03995 Genome accession   NZ_CP116490
Coordinates   807435..809282 (+) Length   615 a.a.
NCBI ID   WP_012054612.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 93P10H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802435..814282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV187_RS03965 (BV187_0808) yihI 803721..804281 (+) 561 WP_005648548.1 Der GTPase-activating protein YihI -
  BV187_RS03970 (BV187_0809) - 804285..804725 (+) 441 WP_005648547.1 DUF2489 domain-containing protein -
  BV187_RS03975 (BV187_0810) - 804787..805413 (-) 627 WP_005629869.1 response regulator -
  BV187_RS03980 (BV187_0811) lysA 805619..806866 (-) 1248 WP_005685899.1 diaminopimelate decarboxylase -
  BV187_RS03985 (BV187_0812) lptM 806914..807030 (-) 117 WP_005665069.1 LPS translocon maturation chaperone LptM -
  BV187_RS03990 (BV187_0813) cyaY 807128..807433 (+) 306 WP_005685901.1 iron donor protein CyaY -
  BV187_RS03995 (BV187_0814) recQ 807435..809282 (+) 1848 WP_012054612.1 DNA helicase RecQ Machinery gene
  BV187_RS04000 (BV187_0815) proS 809378..811096 (+) 1719 WP_012054611.1 proline--tRNA ligase -
  BV187_RS04005 (BV187_0816) lptD 811184..813532 (-) 2349 WP_105197710.1 LPS assembly protein LptD -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 69707.14 Da        Isoelectric Point: 8.0094

>NTDB_id=710426 BV187_RS03995 WP_012054612.1 807435..809282(+) (recQ) [Haemophilus influenzae strain 93P10H1]
MQDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERITESLRNKGVSAAAYHAGMETARRDRVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIVVLRGMHNQKIIELQHDKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEELELAMPRISSISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGLPFIKLIQEHKAILANA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=710426 BV187_RS03995 WP_012054612.1 807435..809282(+) (recQ) [Haemophilus influenzae strain 93P10H1]
ATGCAGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTTGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTCATTAATGCCACTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGTAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACGTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCGCATTGTATTTCTCAATGGGGGCATGAT
TTTCGCCCTGAATATACCCAGCTTGGTGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAACATTCGTTATACCTTGGAAGAAAAATATAAACCAATGGAGCAATTGACACGTTTTGTGTTGGCTCAAAAGGGCAAG
AGTGGGATTATTTATTGCAACAGTCGAAACAAGGTTGAACGAATTACGGAAAGTTTACGCAATAAAGGTGTCTCTGCCGC
AGCTTATCACGCGGGAATGGAAACGGCACGGCGTGATCGTGTGCAACAGGATTTTCAGCGTGATAATGTGCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGGTTTGTTGCCCATTTTGATTTGCCTCGTAGCATT
GAATCTTATTATCAAGAAACAGGTCGGGCAGGACGTGATGATTTACCTGCTGAGGCGGTTTTGTTTTATGAACCAGCGGA
TTACGCTTGGTTACAAAAAATTCTTTTAGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAGCATAAATTAGAAGCTA
TTGGAGAATTTGCAGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGTGAGCATCGACAAACACCATGC
AATAACTGTGATATATGCCTTGATCCTCCTAAAAAATATGATGGATTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGGCAATGTTTCGGTGCGCATTATGTGATAGTGGTGTTGCGTGGAATGCATAATCAGAAAATTATTGAACTCC
AGCACGATAAACTTTCAGTGTATGGTATCGGAAAAGATAAAAGCAAAGAGCATTGGCAGTCTGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTCATCAGTGAATTAAATCCAACGTTGCAGCTTACCGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAAGAGTTAGAACTGGCAATGCCTCGTATTTCTTCAATCAGTAAAATTGCCCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCA
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGTTCAATTAAATTAGAACGCTTTGGGCTGCCTTTTATTAAACTTATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

DEAD/DEAH box helicase (DEAD)

(32-191)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)

RQC domain (RQC)

(409-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.597

96.911

0.384