Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NNL22_RS12910 Genome accession   NZ_CP101527
Coordinates   2905919..2907283 (-) Length   454 a.a.
NCBI ID   WP_251811383.1    Uniprot ID   A0A9E8HGT1
Organism   Alkalimarinus sediminis strain FA028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2900919..2912283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNL22_RS12890 (NNL22_12880) nrdR 2901706..2902170 (-) 465 WP_251811379.1 transcriptional regulator NrdR -
  NNL22_RS12895 (NNL22_12885) glyA 2902321..2903577 (-) 1257 WP_251811380.1 serine hydroxymethyltransferase -
  NNL22_RS12900 (NNL22_12890) ettA 2903765..2905426 (+) 1662 WP_251811381.1 energy-dependent translational throttle protein EttA -
  NNL22_RS12905 (NNL22_12895) - 2905518..2905913 (+) 396 WP_251811382.1 PilZ domain-containing protein -
  NNL22_RS12910 (NNL22_12900) radA 2905919..2907283 (-) 1365 WP_251811383.1 DNA repair protein RadA Machinery gene
  NNL22_RS12915 (NNL22_12905) - 2907500..2908777 (+) 1278 WP_251811384.1 bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase -
  NNL22_RS12920 (NNL22_12910) hemE 2908871..2909938 (-) 1068 WP_251811385.1 uroporphyrinogen decarboxylase -
  NNL22_RS12925 (NNL22_12915) - 2910316..2911734 (-) 1419 WP_251811386.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48540.87 Da        Isoelectric Point: 6.4991

>NTDB_id=710407 NNL22_RS12910 WP_251811383.1 2905919..2907283(-) (radA) [Alkalimarinus sediminis strain FA028]
MAKVKTAYVCTDCGAEYGKWQGQCSDCGEWNTISEFKVGKSSSSKGARFEGYAGKLSEVQSLDQINLEEQPRFTSGIGEF
DRVLGGGLVPGSAILIGGSPGAGKSTLLLQTMCYLAGSMPALYITGEESLQQVAMRATRLGIKTNNLQMLSETNVESIIA
AAQKTQPKVLVVDSIQVVHMEGIESAPGSVSQVRESAAMLTRYAKQTGTVLFLVGHVTKEGSIAGPKVLEHMIDCSIMLD
GSDDSRFRTLRGIKNRFGAVNELGVFAMLENGLKEVTNPSAIFLNRSEEQMPGSGVTVIWEGTRPLLIELQALVDESQMS
YPKRVAIGLDQNRLAMLLAVLHRHGGLHCGDQDVFVNVVGGVRVSETSADLAALLAVVSSFRSICLPQDMVIIGEVGLSG
EIRPVPSGQERVHEAAKHGFKRAIVPKANAPKKPIDGMEVIAVQKLSEALNIIG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=710407 NNL22_RS12910 WP_251811383.1 2905919..2907283(-) (radA) [Alkalimarinus sediminis strain FA028]
ATGGCAAAAGTAAAAACAGCCTATGTCTGTACCGATTGCGGTGCAGAATATGGTAAATGGCAAGGTCAGTGCTCAGATTG
TGGTGAGTGGAATACCATTAGCGAGTTTAAAGTAGGTAAGTCCTCGTCTTCCAAGGGGGCGCGTTTTGAGGGTTATGCGG
GCAAGTTATCGGAAGTGCAATCGCTTGACCAGATCAATCTCGAAGAGCAGCCACGTTTTACTTCTGGCATTGGTGAGTTT
GATCGCGTATTGGGTGGCGGTCTTGTGCCAGGGTCTGCCATTCTCATTGGTGGCTCGCCAGGAGCGGGTAAGAGTACGTT
GTTGCTGCAAACCATGTGTTATTTGGCGGGCAGTATGCCGGCTTTATATATTACTGGTGAAGAGTCTCTGCAGCAGGTGG
CAATGCGGGCCACTCGTTTGGGAATCAAAACCAATAACTTGCAAATGTTGTCTGAAACCAATGTGGAGTCGATTATAGCG
GCAGCGCAAAAAACACAGCCAAAGGTTTTAGTGGTGGATAGTATACAGGTTGTGCATATGGAGGGGATTGAATCTGCACC
AGGCAGTGTCTCGCAGGTGCGTGAGAGTGCAGCGATGTTAACCCGTTATGCGAAACAAACCGGTACGGTGTTGTTCTTGG
TCGGCCATGTTACTAAAGAGGGGTCGATTGCAGGGCCTAAAGTTCTAGAGCATATGATCGACTGTTCGATTATGCTAGAT
GGGTCGGATGACAGTCGCTTTAGAACCTTGCGTGGAATCAAAAACCGCTTTGGTGCCGTCAATGAGCTAGGGGTCTTTGC
TATGCTTGAGAACGGTCTCAAAGAGGTGACTAATCCCAGTGCGATATTCCTCAATCGGTCAGAAGAGCAGATGCCGGGTA
GTGGTGTGACGGTTATCTGGGAGGGGACTCGGCCACTATTGATTGAGTTGCAGGCGCTGGTAGATGAGAGTCAGATGAGC
TACCCGAAAAGGGTGGCTATCGGCTTAGATCAAAACCGACTAGCGATGTTGCTAGCTGTTTTGCACCGTCACGGCGGGCT
CCATTGCGGCGATCAAGATGTATTTGTTAACGTGGTAGGCGGTGTTCGAGTGTCTGAAACCAGTGCTGATCTTGCGGCAC
TGTTGGCGGTGGTGTCGAGCTTTAGAAGTATCTGTCTACCTCAAGATATGGTGATTATCGGCGAGGTGGGGTTGTCGGGG
GAGATACGGCCTGTGCCCAGTGGGCAAGAACGAGTTCATGAGGCTGCAAAGCACGGGTTTAAGCGTGCCATTGTGCCAAA
AGCCAATGCACCGAAGAAGCCGATTGATGGAATGGAGGTGATAGCCGTACAAAAACTATCAGAGGCGCTTAATATTATAG
GCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.786

99.78

0.487
  radA Streptococcus mitis NCTC 12261

41.85

100

0.419
  radA Streptococcus pneumoniae D39

41.758

100

0.418
  radA Streptococcus pneumoniae TIGR4

41.758

100

0.418
  radA Streptococcus pneumoniae R6

41.758

100

0.418
  radA Streptococcus pneumoniae Rx1

41.758

100

0.418
  radA Streptococcus mitis SK321

41.907

99.339

0.416