Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BV189_RS02535 Genome accession   NZ_CP116489
Coordinates   518522..519124 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain 93P28H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 513522..524124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV189_RS02515 (BV189_0515) comA 513568..514365 (-) 798 WP_105893550.1 competence protein ComA Machinery gene
  BV189_RS02520 (BV189_0516) - 514464..517064 (+) 2601 WP_105893551.1 penicillin-binding protein 1A -
  BV189_RS02525 (BV189_0517) - 517137..517982 (+) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BV189_RS02530 (BV189_0518) - 518135..518464 (+) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  BV189_RS02535 (BV189_0519) recR 518522..519124 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  BV189_RS02540 (BV189_0520) - 519140..521095 (+) 1956 WP_011961680.1 DNA topoisomerase III -
  BV189_RS02545 (BV189_0521) secG 521204..521542 (+) 339 WP_011961679.1 preprotein translocase subunit SecG -
  BV189_RS02555 (BV189_0523) - 522088..523758 (-) 1671 WP_005686908.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=710350 BV189_RS02535 WP_005626527.1 518522..519124(+) (recR) [Haemophilus influenzae strain 93P28H1]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=710350 BV189_RS02535 WP_005626527.1 518522..519124(+) (recR) [Haemophilus influenzae strain 93P28H1]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCGGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGTGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGATACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
CTTAATGGGACACTTGTCTCCACTTGATGGCATTGGTCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGTTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTCGCAACAAATCCAACTGTGGAGGGCGATGCAACAGCAAACTACATCGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCATGGCATTCCTGTGGGTGGGGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43