Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NM966_RS11320 Genome accession   NZ_CP101506
Coordinates   2211800..2212135 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain B12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206800..2217135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM966_RS11300 (NM966_11255) gcvT 2207276..2208373 (-) 1098 WP_035390798.1 glycine cleavage system aminomethyltransferase GcvT -
  NM966_RS11305 (NM966_11260) - 2208935..2210605 (+) 1671 WP_008342199.1 DEAD/DEAH box helicase -
  NM966_RS11310 (NM966_11265) - 2210620..2211417 (+) 798 WP_017367588.1 YqhG family protein -
  NM966_RS11315 (NM966_11270) - 2211602..2211766 (+) 165 WP_080934047.1 anti-repressor SinI family protein -
  NM966_RS11320 (NM966_11275) sinR 2211800..2212135 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  NM966_RS11325 (NM966_11280) tasA 2212203..2213003 (-) 801 WP_035390805.1 biofilm matrix protein TasA -
  NM966_RS11330 (NM966_11285) sipW 2213062..2213634 (-) 573 WP_041091749.1 signal peptidase I SipW -
  NM966_RS11335 (NM966_11290) tapA 2213684..2214211 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  NM966_RS11340 (NM966_11295) - 2214464..2214790 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  NM966_RS11345 (NM966_11300) - 2214824..2215024 (-) 201 WP_046343970.1 YqzE family protein -
  NM966_RS11350 (NM966_11305) comGG 2215085..2215468 (-) 384 WP_046343972.1 competence type IV pilus minor pilin ComGG -
  NM966_RS11355 (NM966_11310) comGF 2215465..2215962 (-) 498 WP_046343974.1 competence type IV pilus minor pilin ComGF -
  NM966_RS11360 (NM966_11315) comGE 2215904..2216218 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  NM966_RS11365 (NM966_11320) comGD 2216202..2216648 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  NM966_RS11370 (NM966_11325) comGC 2216641..2216934 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=710299 NM966_RS11320 WP_017357978.1 2211800..2212135(+) (sinR) [Bacillus altitudinis strain B12]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=710299 NM966_RS11320 WP_017357978.1 2211800..2212135(+) (sinR) [Bacillus altitudinis strain B12]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928