Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J68_RS01835 Genome accession   NZ_AP018773
Coordinates   368939..369235 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain CHBN-III-2 isolate 13H39     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 363939..374235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J68_RS01820 - 365010..365174 (-) 165 WP_012054638.1 hypothetical protein -
  K6J68_RS01825 (CHBNIII2_03510) - 365477..368494 (+) 3018 WP_221281815.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J68_RS01830 (CHBNIII2_03520) - 368764..368946 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J68_RS01835 (CHBNIII2_03530) HI0659 368939..369235 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J68_RS01840 (CHBNIII2_03540) - 369419..371335 (+) 1917 WP_105197700.1 ABC transporter ATP-binding protein -
  K6J68_RS01845 (CHBNIII2_03550) - 371345..371881 (+) 537 WP_105197698.1 type I DNA topoisomerase -
  K6J68_RS01850 (CHBNIII2_03560) - 371897..372448 (+) 552 WP_105197696.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J68_RS01855 (CHBNIII2_03570) aroE 372452..373258 (+) 807 WP_105197694.1 shikimate dehydrogenase -
  K6J68_RS01860 (CHBNIII2_03580) - 373270..374028 (+) 759 WP_012054646.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=71026 K6J68_RS01835 WP_005650837.1 368939..369235(+) (HI0659) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=71026 K6J68_RS01835 WP_005650837.1 368939..369235(+) (HI0659) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment