Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPB302_RS08755 Genome accession   NZ_CP101505
Coordinates   1982168..1983529 (+) Length   453 a.a.
NCBI ID   WP_053973904.1    Uniprot ID   -
Organism   Polaribacter dokdonensis strain KCTC 12392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977168..1988529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB302_RS08730 - 1977326..1978888 (-) 1563 WP_053973909.1 DUF4270 domain-containing protein -
  LPB302_RS08735 - 1978897..1979709 (-) 813 WP_053973908.1 glycogen/starch synthase -
  LPB302_RS08740 panC 1979807..1980658 (+) 852 WP_053973907.1 pantoate--beta-alanine ligase -
  LPB302_RS08745 panD 1980683..1981033 (+) 351 WP_053973906.1 aspartate 1-decarboxylase -
  LPB302_RS08750 - 1981039..1981980 (+) 942 WP_053973905.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LPB302_RS08755 radA 1982168..1983529 (+) 1362 WP_053973904.1 DNA repair protein RadA Machinery gene
  LPB302_RS08760 - 1983579..1984325 (-) 747 WP_053973903.1 uroporphyrinogen-III synthase -
  LPB302_RS08765 - 1984344..1984985 (-) 642 WP_053973902.1 DUF4271 domain-containing protein -
  LPB302_RS08770 - 1985068..1985787 (+) 720 WP_053973901.1 polyprenol monophosphomannose synthase -
  LPB302_RS08775 - 1985795..1987132 (+) 1338 WP_053973900.1 dihydroorotase -
  LPB302_RS08780 - 1987134..1987592 (+) 459 WP_053973899.1 DUF4296 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49544.94 Da        Isoelectric Point: 7.0187

>NTDB_id=710258 LPB302_RS08755 WP_053973904.1 1982168..1983529(+) (radA) [Polaribacter dokdonensis strain KCTC 12392]
MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEVVQKEEKRVWKQAKTAKQTINKPLKIADIQLNPEERVVTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNISQKVLYVSGEESQSQIKMRAERLEANNSNCLILTETNTQQIFKNI
EETEPEVLVIDSIQTLHTNSIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTSELGIYEMLSDGLREISNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLNMILAVLEKRAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDVAINPNVCFAAEVGLAGEI
RPVSKIDQRILEAEKLGYKSFVTSKYNKISSKNHSIKLILVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=710258 LPB302_RS08755 WP_053973904.1 1982168..1983529(+) (radA) [Polaribacter dokdonensis strain KCTC 12392]
ATGGCCAAAACCAAAACAACTTTTTTCTGTCAGAATTGTGGAACTCAACATGCAAAATGGGTTGGACAATGTGGTGCCTG
TAAAGAATGGAACACCATTGTAGAAGAGGTAGTTCAAAAAGAAGAAAAGCGTGTTTGGAAACAAGCTAAAACTGCCAAGC
AGACTATTAATAAACCTTTAAAAATTGCAGACATTCAACTAAATCCAGAAGAAAGAGTTGTAACTAATAATAATGAATTA
GATACTGTTTTAGGTGGTGGTTTAGTAAAAGGCTCTGTAACGCTTTTAGGTGGTGAACCTGGTATTGGAAAATCGACATT
GTTATTGCAAGTAGCCTTAAACATCAGCCAAAAAGTATTATATGTTTCTGGTGAAGAAAGTCAGTCTCAAATAAAAATGA
GAGCAGAAAGACTAGAAGCCAATAACTCTAATTGTTTGATTTTAACTGAAACCAATACACAACAAATATTTAAAAATATA
GAAGAAACTGAGCCAGAAGTTTTGGTAATAGATTCTATACAAACCTTACACACAAACTCTATTGAAGCTTCACCTGGAAG
TATCTCTCAAATTAGAGAAACCTCTGCAGAGTTAATAAAATTTGCCAAAGAAACTGCAACTCCTGTTTTGTTAATAGGTC
ATATCAACAAAGAAGGAAACATTGCAGGGCCTAAAATCTTAGAGCACATGGTTGATGTTGTTTTACAATTTGAAGGCGAT
AGAAATCATACATATAGAATTTTAAGGAGCCAGAAAAACAGATTTGGTTCTACCTCAGAATTGGGTATTTATGAAATGCT
TTCAGATGGTTTGCGCGAAATTTCAAATCCGTCAGAAATTTTAATCTCTAAAAAAGACGCAGATTTAAGTGGTACAGCAA
TTGCATCAACTTTAGAAGGCATTAGACCTTTAATGATAGAGATTCAAGCATTAGTTTCTACAGCAGTTTATGGCACACCT
CAAAGATCTACAACCGGTTATAATTTAAAAAGATTAAACATGATTTTAGCTGTTCTTGAAAAAAGAGCAGGTTTTAAATT
GGGTGCAAAAGATGTGTTTTTAAATATTACTGGAGGTATTAATGTTGATGACCCAGCCATTGATTTGGCTGTTGTTGCAG
CTATTTTATCTTCTAATCAAGATGTAGCCATCAACCCAAATGTTTGTTTTGCTGCAGAAGTAGGTTTGGCTGGTGAAATA
AGGCCTGTATCAAAAATAGATCAACGAATTTTAGAAGCAGAAAAGTTAGGTTATAAAAGTTTTGTTACCTCTAAATACAA
TAAGATATCTTCAAAAAATCACTCTATTAAACTGATCTTAGTTGGTAAAATAGAAGAAGCTTTTGCAACATTATTTGCAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.899

100

0.49
  radA Streptococcus mitis SK321

47.921

100

0.483
  radA Streptococcus mitis NCTC 12261

47.921

100

0.483
  radA Streptococcus pneumoniae Rx1

47.921

100

0.483
  radA Streptococcus pneumoniae D39

47.921

100

0.483
  radA Streptococcus pneumoniae R6

47.921

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.921

100

0.483