Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IF662_RS05110 Genome accession   NZ_AP023427
Coordinates   1075834..1076349 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain HUE1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070834..1081349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF662_RS05065 (RVB1_10060) csrA 1071421..1071606 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  IF662_RS05095 (RVB1_10070) yqaB 1073064..1073630 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  IF662_RS05100 (RVB1_10080) yqaA 1073627..1074055 (+) 429 WP_001287454.1 YqaA family protein -
  IF662_RS05105 (RVB1_10090) gshA 1074128..1075684 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  IF662_RS05110 (RVB1_10100) luxS 1075834..1076349 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  IF662_RS05115 (RVB1_10110) emrB 1076413..1077951 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  IF662_RS05120 (RVB1_10120) emrA 1077968..1079140 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  IF662_RS05125 (RVB1_10130) emrR 1079267..1079797 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  IF662_RS05130 (RVB1_10140) ygaH 1079888..1080223 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  IF662_RS05135 (RVB1_10150) ygaZ 1080213..1080950 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=71023 IF662_RS05110 WP_001130211.1 1075834..1076349(+) (luxS) [Escherichia coli strain HUE1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=71023 IF662_RS05110 WP_001130211.1 1075834..1076349(+) (luxS) [Escherichia coli strain HUE1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment