Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PJV85_RS06800 Genome accession   NZ_CP116457
Coordinates   1373577..1374185 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain 1095     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1368577..1379185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJV85_RS06770 (PJV85_06770) - 1368824..1369306 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  PJV85_RS06775 (PJV85_06775) - 1369451..1370920 (-) 1470 WP_011285659.1 cell division site-positioning protein MapZ family protein -
  PJV85_RS06780 (PJV85_06780) - 1370934..1372088 (-) 1155 WP_136274052.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  PJV85_RS06790 (PJV85_06790) gpsB 1372533..1372859 (-) 327 WP_002983626.1 cell division regulator GpsB -
  PJV85_RS06795 (PJV85_06795) - 1372981..1373496 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  PJV85_RS06800 (PJV85_06800) recU 1373577..1374185 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  PJV85_RS06805 (PJV85_06805) pbp1a 1374172..1376337 (+) 2166 WP_272153176.1 penicillin-binding protein PBP1A -
  PJV85_RS06810 (PJV85_06810) pepC 1376804..1378141 (-) 1338 WP_002983616.1 aminopeptidase C -
  PJV85_RS06815 (PJV85_06815) nadE 1378326..1379150 (-) 825 WP_136274051.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=710219 PJV85_RS06800 WP_002983622.1 1373577..1374185(+) (recU) [Streptococcus pyogenes strain 1095]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=710219 PJV85_RS06800 WP_002983622.1 1373577..1374185(+) (recU) [Streptococcus pyogenes strain 1095]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5