Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   NMQ06_RS04570 Genome accession   NZ_CP101472
Coordinates   968582..969298 (-) Length   238 a.a.
NCBI ID   WP_002507139.1    Uniprot ID   -
Organism   Staphylococcus equorum strain DX2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 963582..974298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMQ06_RS04550 (NMQ06_04545) - 964669..964896 (+) 228 WP_002507135.1 sulfurtransferase TusA family protein -
  NMQ06_RS04555 (NMQ06_04550) - 965040..966002 (+) 963 WP_021339966.1 LacI family DNA-binding transcriptional regulator -
  NMQ06_RS04560 (NMQ06_04555) - 966095..967579 (+) 1485 WP_021339967.1 sucrose-6-phosphate hydrolase -
  NMQ06_RS04565 (NMQ06_04560) - 967576..968544 (+) 969 WP_021339968.1 carbohydrate kinase -
  NMQ06_RS04570 (NMQ06_04565) agrA 968582..969298 (-) 717 WP_002507139.1 quorum-sensing response regulator AgrA Regulator
  NMQ06_RS04575 (NMQ06_04570) agrC 969311..970606 (-) 1296 WP_021339969.1 quorum-sensing sensor histidine kinase AgrC -
  NMQ06_RS04580 (NMQ06_04575) agrD 970630..970767 (-) 138 WP_021339970.1 cyclic lactone autoinducer peptide AgrD -
  NMQ06_RS04585 (NMQ06_04580) - 970770..971339 (-) 570 WP_021339971.1 accessory gene regulator AgrB -
  NMQ06_RS04590 (NMQ06_04585) - 972098..972883 (-) 786 WP_021339973.1 carbon-nitrogen family hydrolase -
  NMQ06_RS04595 (NMQ06_04590) - 973117..973746 (-) 630 WP_065367466.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27930.75 Da        Isoelectric Point: 4.9764

>NTDB_id=710185 NMQ06_RS04570 WP_002507139.1 968582..969298(-) (agrA) [Staphylococcus equorum strain DX2]
MKIFICEDDERQRENMISIINNYIMIEEKPMEIEVATADPYEVLERSKDLSDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELNQLDDRFFRCHNSFVVNRHNIESIDSKSRIVYFKNQEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=710185 NMQ06_RS04570 WP_002507139.1 968582..969298(-) (agrA) [Staphylococcus equorum strain DX2]
ATGAAGATATTCATATGTGAAGATGATGAAAGACAACGTGAGAATATGATTTCGATTATCAACAACTACATCATGATTGA
AGAGAAACCGATGGAAATTGAAGTTGCAACTGCCGATCCTTATGAAGTTTTAGAACGTTCTAAAGATTTAAGTGATATAG
GGTGTTACTTTTTAGATATACAATTGGAAGCCGACATTAACGGTATCAAGCTTGCTAGTGAAATTCGCAAGCACGATCCT
GTAGGTAATATCATTTTTGTTACAAGTCATAGCGAGCTTACATATCTTACTTTTGTTTATAAAGTAGCAGCGATGGACTT
TATTTTTAAAGATGATCCAGATGAATTAAAATCTAGAATCATTGATTGTTTAGAAACTTCAGAATCTAGGTTAAAATTAC
TTTCTAAAGAAAGCACTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCAGTATATGTTCAATATGATGATGTTATG
TTTTTTGAGTCCTCTACTAAATCTCATCGATTGATTGCGCACTTAGACAATAGACAAATTGAATTCTATGGTAACCTTAA
AGAACTTAACCAACTTGATGATAGATTCTTTAGATGTCATAACAGTTTCGTTGTTAACAGACATAATATTGAATCTATTG
ATTCAAAATCTCGCATTGTTTATTTCAAAAACCAAGAACATTGCTTTGCTTCAGTAAGAAATGTAAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866