Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NMQ00_RS06615 Genome accession   NZ_CP101462
Coordinates   1277608..1279305 (+) Length   565 a.a.
NCBI ID   WP_255178438.1    Uniprot ID   -
Organism   Exiguobacterium aurantiacum strain CX2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1275397..1276967 1277608..1279305 flank 641


Gene organization within MGE regions


Location: 1275397..1279305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMQ00_RS06605 (NMQ00_06590) - 1275397..1276967 (+) 1571 WP_255178437.1 IS3 family transposase -
  NMQ00_RS06610 (NMQ00_06595) argR 1277145..1277594 (+) 450 WP_021067696.1 transcriptional regulator AhrC/ArgR -
  NMQ00_RS06615 (NMQ00_06600) recN 1277608..1279305 (+) 1698 WP_255178438.1 DNA repair protein RecN Machinery gene

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63409.19 Da        Isoelectric Point: 4.6726

>NTDB_id=710129 NMQ00_RS06615 WP_255178438.1 1277608..1279305(+) (recN) [Exiguobacterium aurantiacum strain CX2]
MLAELSIKQFAIIDELNITFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFNVESDHPIIDAA
TQYGIEIEEGTVILRRDLHSSGKSVCRVNGKMMPLSTLRELGRLLVDIHGQHEHQHLMDAEYHLGILDSFAEAELAPLLE
RYRDAYVDWKNVADELKRLSQSEQELAQRMDLLAFQTNEIEAAELKVGEEQALTEERNELANFERIHQHVRLSYEAVADE
AKGLDQIGIAMREMEEASALSTSLAPMAETISNAYFLLEDAKFQLRDQLDSLEFDPIRLDEIETRLALFQQLKRKYGATI
DEVITYGEKIADELKSMTNREEHLQELSDRLERLEQTVRTTGLALSAARKQAATELEKAIQRELKELYMEKTQFEVRFKE
GAYKVDGLDQVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTEMDDRTKTNVSTLGHAERVDELGRMIAGAQMTDLTKQHVEELLTMSLQLKRKF
IEGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=710129 NMQ00_RS06615 WP_255178438.1 1277608..1279305(+) (recN) [Exiguobacterium aurantiacum strain CX2]
ATGTTAGCAGAACTATCGATCAAACAATTTGCGATCATCGATGAACTGAATATCACGTTCAACCGTGGGATGACCGTATT
GACAGGGGAGACCGGGGCCGGGAAATCAATCCTGCTCGACGCCATCGGTTTGCTCGTCGGGGGACGAGGCTCAAGCGAGT
TCGTCCGCTATGGCCAAGACAAGGCGGAGATCGAAGGGCTGTTCAACGTCGAATCGGACCATCCGATTATCGATGCGGCG
ACTCAGTACGGCATCGAGATCGAAGAAGGGACCGTCATATTGCGCCGCGACTTACATAGCAGCGGGAAAAGCGTTTGCCG
CGTCAACGGGAAGATGATGCCGTTGTCGACGTTGCGTGAGCTCGGTCGGTTGCTCGTCGATATCCATGGCCAACATGAAC
ATCAACACTTGATGGATGCCGAATACCATCTCGGCATCTTGGACAGTTTCGCTGAAGCCGAACTCGCCCCGCTCCTCGAG
CGTTATCGCGACGCTTACGTCGACTGGAAGAACGTCGCCGATGAGTTGAAGCGATTGAGTCAAAGTGAACAAGAGCTGGC
CCAGCGCATGGACCTGCTCGCGTTCCAGACGAACGAGATCGAGGCTGCCGAGCTGAAGGTCGGTGAAGAACAGGCACTCA
CCGAGGAACGGAACGAGCTCGCCAATTTCGAGCGGATTCATCAACATGTCCGGTTATCGTATGAGGCCGTCGCGGACGAG
GCGAAAGGGCTCGATCAAATCGGGATCGCCATGCGCGAGATGGAGGAAGCGTCCGCACTGTCGACATCGCTTGCGCCGAT
GGCCGAGACGATTTCGAACGCCTACTTCCTGCTCGAAGACGCGAAATTCCAGTTGCGTGACCAGCTCGACTCGCTCGAAT
TCGATCCGATTCGTCTCGATGAGATCGAGACGAGGCTCGCCTTGTTCCAGCAGTTGAAGCGGAAGTACGGGGCCACGATC
GACGAGGTCATCACGTATGGGGAGAAAATCGCCGACGAGTTAAAGTCGATGACGAATCGGGAAGAACATTTGCAAGAGCT
GTCAGACCGCCTCGAGCGGCTCGAGCAGACGGTGCGTACGACCGGGCTGGCATTATCGGCGGCCCGTAAACAAGCGGCGA
CCGAGCTCGAGAAGGCGATTCAACGCGAATTGAAAGAATTGTACATGGAGAAGACCCAGTTCGAGGTCCGCTTCAAAGAA
GGGGCGTACAAAGTAGACGGTCTTGACCAAGTCGAGTTCTATATGATGACGAACGTCGGTGAACCGTTCAAACCGCTCGC
GAAAGTCGCGTCAGGCGGAGAACTGTCCCGCGTCATGCTCGCCTTGAAGTCGATTTTCTCCCGAACGGTCGGCGTCGCAT
CGATCATTTTCGATGAAGTGGACACGGGCGTCTCCGGACGGGTCGCCCAAGCGATGGGCGAGAAAATCTTCCGCCTGTCG
GTCGGCTCGCAAGTGCTCTGTATCACCCACTTGGCCCAAGTGGCCGCGATGGCGGACCAGCATTTGTATATCACGAAGAC
GGAGATGGACGACCGTACGAAGACGAACGTCTCGACGCTCGGTCATGCCGAACGGGTCGATGAGCTCGGGCGCATGATCG
CTGGAGCGCAGATGACGGATTTGACGAAACAACATGTGGAGGAACTGCTCACTATGTCCCTCCAATTAAAACGGAAGTTT
ATCGAAGGGGTGTCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.45

100

0.552