Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NMB96_RS22550 Genome accession   NZ_CP101417
Coordinates   5251652..5252053 (-) Length   133 a.a.
NCBI ID   WP_023904776.1    Uniprot ID   A0AAU0BDV7
Organism   Xanthomonas hortorum strain jj2001     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5246652..5257053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS22535 (NMB96_22510) - 5248666..5250702 (-) 2037 WP_255085774.1 methyl-accepting chemotaxis protein -
  NMB96_RS22540 (NMB96_22515) - 5250742..5251272 (-) 531 WP_006450736.1 chemotaxis protein CheW -
  NMB96_RS22545 (NMB96_22520) - 5251272..5251634 (-) 363 WP_006450735.1 response regulator -
  NMB96_RS22550 (NMB96_22525) pilG 5251652..5252053 (-) 402 WP_023904776.1 twitching motility response regulator PilG Regulator
  NMB96_RS22555 (NMB96_22530) gshB 5252290..5253240 (+) 951 WP_006450733.1 glutathione synthase -
  NMB96_RS22560 (NMB96_22535) - 5253237..5254112 (+) 876 WP_023904778.1 energy transducer TonB -
  NMB96_RS22565 (NMB96_22540) - 5254194..5255111 (-) 918 WP_043889362.1 ADP-ribosylglycohydrolase family protein -
  NMB96_RS22570 (NMB96_22545) tsaB 5255108..5255827 (-) 720 WP_255085777.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14690.07 Da        Isoelectric Point: 7.1350

>NTDB_id=710103 NMB96_RS22550 WP_023904776.1 5251652..5252053(-) (pilG) [Xanthomonas hortorum strain jj2001]
MSEHIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=710103 NMB96_RS22550 WP_023904776.1 5251652..5252053(-) (pilG) [Xanthomonas hortorum strain jj2001]
ATGAGTGAACACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGACGATTCGAAGACTATTCGCCG
CACCGCCGAAACGCTGCTCAAGCGAGAAGGGTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACTCGTGAAGAACTACTGAGCGCGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684