Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMB96_RS12730 Genome accession   NZ_CP101417
Coordinates   2970603..2971994 (+) Length   463 a.a.
NCBI ID   WP_023903137.1    Uniprot ID   A0A6V7F8A8
Organism   Xanthomonas hortorum strain jj2001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2965603..2976994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB96_RS12715 (NMB96_12700) cyoC 2967232..2967861 (+) 630 WP_006450194.1 cytochrome o ubiquinol oxidase subunit III -
  NMB96_RS12720 (NMB96_12705) cyoD 2967861..2968196 (+) 336 WP_006450195.1 cytochrome o ubiquinol oxidase subunit IV -
  NMB96_RS12725 (NMB96_12710) - 2968367..2970247 (+) 1881 WP_023903134.1 tetratricopeptide repeat protein -
  NMB96_RS12730 (NMB96_12715) radA 2970603..2971994 (+) 1392 WP_023903137.1 DNA repair protein RadA Machinery gene
  NMB96_RS12735 (NMB96_12720) - 2972455..2972841 (+) 387 WP_023903138.1 DUF805 domain-containing protein -
  NMB96_RS12740 (NMB96_12725) - 2972964..2973749 (-) 786 WP_023903139.1 response regulator transcription factor -
  NMB96_RS12745 (NMB96_12730) - 2974672..2976027 (+) 1356 WP_174556022.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48741.99 Da        Isoelectric Point: 7.3522

>NTDB_id=710096 NMB96_RS12730 WP_023903137.1 2970603..2971994(+) (radA) [Xanthomonas hortorum strain jj2001]
MAKAKIAYVCGECGAEYNKWQGQCTECGVWNTLSEIVLESATPGGKASPAASRRTGWSGKTEAPKITALKDVRQSEQSRV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMASTLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAET
GIENILQHASVARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPKANAPKTTSIKGMEIIAVERLSQALEAAAD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=710096 NMB96_RS12730 WP_023903137.1 2970603..2971994(+) (radA) [Xanthomonas hortorum strain jj2001]
ATGGCGAAGGCAAAAATAGCCTATGTCTGCGGCGAGTGTGGCGCCGAATACAACAAGTGGCAGGGGCAGTGCACCGAGTG
CGGGGTGTGGAATACGCTCAGCGAAATCGTGCTCGAAAGCGCAACCCCCGGCGGCAAGGCATCGCCGGCGGCTTCGCGCC
GCACTGGTTGGTCGGGCAAGACCGAGGCGCCCAAGATCACCGCGCTCAAGGACGTGCGCCAATCCGAACAGTCGCGCGTG
TCCACCGGCATCGGCGAGTTCGATCGGGTGCTGGGCGGCGGTCTGGTCGAAGGCGCGGTGGTGTTGATCGGTGGCGACCC
CGGCATCGGCAAGTCGACGTTGTTGCTGCAGGCATTGGCTAGCATGGCCAGTACGCTGCCGGTGCTGTACGTCACCGGCG
AAGAATCGCTGGCCCAGGTCGCAGGACGTGCGGTGCGCCTGGATCTGCCGCTGGAAGGCCTGAATGCGCTGGCCGAAACC
GGCATCGAAAACATTCTGCAGCACGCCAGCGTGGCGCGGCCGAAGCTGATCGTGGCCGACTCGGTACAGACCTTGTGGAC
CGAATCGCTGACCGCAGCGCCGGGTTCGGTGAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTATGCCAAAGAAA
CCGGCACCGCCGTCTTCCTGGTCGGCCATGTGACCAAGGAAGGCGGCATCGCGGGGCCGCGCGTGCTGGAGCACATGGTC
GATGCGGTGCTGTACTTCGAAGGCGAGAGCGGCAGCCGGTTTCGCTTGCTGCGCGCCTTCAAGAATCGCTTCGGTGCGGT
CAACGAGCTGGGGGTGTTTGCGATGGGCGAGAAGGGCCTCAAAGAGGTCTCCAACCCGTCGGCGATCTTCCTGTCCGGCG
GCAGCACCCAGCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACCCGGCCGTTGATGGTGGAGGTGCAGGCGCTG
GTGGATGCCTCGCCGTTGTCCAATCCGCGTCGGGTCGCGGTGGGGTTGGAACAGAATCGGCTGGCTATGCTGCTGGCGGT
GCTGCATCGCCATGGCGGCATCGTGGTGGGCGATCAGGACGTATTCGTCAACGTGGTTGGCGGCATCCGCGTGCAGGAAA
CCGCGGCCGATCTGCCGGTGTTGCTGGCAGTGTTGTCCTCGTTGCGCGACCGGCCATTGGCCGAGAAGACGATCGCCTTC
GGCGAGGTGGGGTTGTCCGGCGAGATCCGGCCGGTGCCCAACGGCGAGGATCGCCTGAAAGAAGCCGCCACCCATGGCTT
CAAGCGCGCGATCGTGCCCAAGGCCAATGCACCGAAGACCACCAGCATCAAGGGCATGGAGATCATTGCGGTGGAGCGGC
TGAGCCAGGCCTTGGAAGCGGCGGCTGACTGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(80-156)

Subunit ChlI of Mg-chelatase (ChlI)

(352-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7F8A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.164

100

0.482
  radA Streptococcus mitis NCTC 12261

43.696

99.352

0.434
  radA Streptococcus pneumoniae Rx1

43.696

99.352

0.434
  radA Streptococcus pneumoniae D39

43.696

99.352

0.434
  radA Streptococcus pneumoniae R6

43.696

99.352

0.434
  radA Streptococcus pneumoniae TIGR4

43.696

99.352

0.434
  radA Streptococcus mitis SK321

43.478

99.352

0.432