Detailed information NTG0710092

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PL330_RS05355
• Genome accession: NZ_CP116411
• Coordinates: 1120323..1121315 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain HH45
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1115323..1126315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PL330_RS05325 (PL330_05325)	ispD	1115384..1116094 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PL330_RS05330 (PL330_05330)	ispF	1116094..1116573 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PL330_RS05335 (PL330_05335)	truD	1116570..1117619 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
PL330_RS05340 (PL330_05340)	surE	1117600..1118361 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
PL330_RS05345 (PL330_05345)	pcm	1118355..1118981 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PL330_RS05350 (PL330_05350)	nlpD	1119166..1120260 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PL330_RS05355 (PL330_05355)	rpoS	1120323..1121315 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PL330_RS05360 (PL330_05360)	-	1121497..1122359 (+)	863	Protein_1048	MBL fold metallo-hydrolase	-
PL330_RS05365 (PL330_05365)	ygbN	1122502..1123866 (-)	1365	WP_271710745.1	GntP family transporter	-
PL330_RS05370 (PL330_05370)	ygbM	1123955..1124731 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PL330_RS05375 (PL330_05375)	ygbL	1124736..1125374 (-)	639	WP_001278994.1	aldolase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=710092 PL330_RS05355 WP_000081550.1 1120323..1121315(+) (rpoS) [Escherichia coli strain HH45]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=710092 PL330_RS05355 WP_000081550.1 1120323..1121315(+) (rpoS) [Escherichia coli strain HH45]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715