Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMG48_RS15630 Genome accession   NZ_CP101416
Coordinates   3409294..3410739 (+) Length   481 a.a.
NCBI ID   WP_271252404.1    Uniprot ID   -
Organism   Pseudanabaena sp. Chao 1811     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3404294..3415739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG48_RS15605 - 3405308..3405973 (-) 666 WP_271252400.1 IS982 family transposase -
  NMG48_RS15610 - 3406148..3407420 (-) 1273 Protein_3091 NF041680 family putative transposase -
  NMG48_RS15615 - 3407524..3408224 (-) 701 Protein_3092 helix-turn-helix domain-containing protein -
  NMG48_RS15620 - 3408237..3408635 (-) 399 WP_271252402.1 transposase -
  NMG48_RS15625 - 3408788..3409138 (-) 351 WP_271252403.1 hypothetical protein -
  NMG48_RS15630 radA 3409294..3410739 (+) 1446 WP_271252404.1 DNA repair protein RadA Machinery gene
  NMG48_RS15635 smc 3410796..3414392 (-) 3597 WP_271252405.1 chromosome segregation protein SMC -
  NMG48_RS15640 - 3415000..3415335 (-) 336 WP_271252406.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52033.82 Da        Isoelectric Point: 6.5079

>NTDB_id=710088 NMG48_RS15630 WP_271252404.1 3409294..3410739(+) (radA) [Pseudanabaena sp. Chao 1811]
MAKAKSRYVCNNCGEDFPQMYGKCPACSSWGTLQEELIPVISTNTNAIATFSHLGTTKSTGKAKPRESLTLSQITDNDQA
RSPSGYEELDRVLGGGIVAGSLVLIGGEPGIGKSTLLLGMAQKLMSRYPTLYVCAEESAQQVKLRSQRLGILEENSDDLY
LLAETDLETVLRELQSLRPKVAVIDSIQALYFSNLNAAPGSVSQVRECTAALMRVAKRENISLFIVGHVTKEGSIAGPKV
LEHMVDTVLYFEGDRFATHRLLRSVKNRFGATQEIGVFEMIDRGLREVSNPSELFLGNRDESVPGTATIVACEGTRPIVV
ELQALVSPTSYSSPRRTTTGIETNRFLQILAVLEKRIGIPLSKLDAYVAAAGGLNVAEPAVDLGVAIAVAASFRDRTVDP
RTVMIGEVGLGGQVRPVSQLDMRLKEAAKLGFKRAIIPSMQVMQNYGMEIVPVTKVLDAIVAALPRTKFEASKPSDDSLD
E

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=710088 NMG48_RS15630 WP_271252404.1 3409294..3410739(+) (radA) [Pseudanabaena sp. Chao 1811]
ATGGCAAAAGCAAAAAGTCGATATGTTTGTAATAACTGTGGTGAAGACTTCCCGCAGATGTATGGGAAATGTCCTGCTTG
CTCCAGTTGGGGAACATTGCAAGAGGAACTTATTCCTGTCATCTCCACAAATACCAATGCGATCGCTACATTCTCGCATC
TCGGTACAACCAAATCCACAGGTAAAGCCAAACCTAGAGAATCCTTAACCCTCTCGCAAATTACCGATAACGACCAAGCG
CGATCGCCTTCTGGTTATGAAGAACTCGATCGCGTATTAGGTGGAGGCATTGTCGCAGGTTCCCTTGTGCTGATTGGTGG
TGAACCGGGGATTGGTAAAAGTACACTCTTATTGGGTATGGCGCAAAAATTGATGAGCCGCTATCCCACGCTCTATGTCT
GTGCCGAGGAGTCAGCGCAACAGGTAAAACTGCGATCGCAACGATTGGGAATCTTAGAGGAGAATTCCGATGATCTCTAT
TTGTTAGCGGAAACAGATTTAGAAACGGTCTTGAGAGAATTGCAATCTCTTCGTCCCAAGGTTGCTGTAATCGATAGTAT
TCAAGCCCTCTACTTCTCCAACTTAAATGCTGCCCCCGGTTCCGTTTCGCAAGTGCGGGAATGTACGGCAGCTCTGATGC
GGGTGGCGAAGCGCGAGAATATCTCGCTATTTATCGTTGGTCATGTGACTAAGGAAGGCTCGATCGCGGGGCCAAAAGTA
TTAGAACATATGGTCGATACAGTTCTTTATTTTGAAGGCGATCGCTTTGCTACTCACAGATTATTGAGATCGGTCAAAAA
TCGCTTTGGCGCAACGCAGGAAATCGGTGTATTTGAGATGATCGATCGCGGCTTGCGTGAAGTTTCCAATCCTTCCGAAT
TATTTCTCGGCAATCGCGATGAATCTGTTCCCGGAACCGCCACAATTGTCGCCTGTGAAGGTACGCGCCCAATTGTGGTG
GAATTACAAGCCCTCGTCAGTCCCACCAGTTATTCTTCACCACGCCGCACCACTACTGGTATCGAGACTAATCGTTTCCT
ACAAATTCTCGCGGTTCTCGAAAAGCGGATTGGGATTCCTTTATCAAAACTTGATGCCTATGTAGCGGCGGCGGGTGGCT
TAAACGTAGCGGAACCTGCGGTGGATCTAGGAGTAGCGATCGCAGTGGCAGCAAGTTTTCGCGATCGCACCGTCGATCCG
CGTACAGTGATGATCGGTGAAGTGGGTTTAGGTGGACAGGTGCGCCCCGTATCGCAATTAGATATGCGATTAAAGGAAGC
AGCAAAATTGGGCTTTAAACGGGCGATTATTCCGAGTATGCAGGTGATGCAAAATTACGGCATGGAAATAGTGCCTGTAA
CTAAGGTTTTAGATGCGATCGTGGCAGCTTTACCTCGCACCAAGTTTGAAGCTTCTAAGCCAAGTGATGACTCACTGGAT
GAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-233)

Subunit ChlI of Mg-chelatase (ChlI)

(379-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.282

97.297

0.499
  radA Streptococcus pneumoniae Rx1

50

91.06

0.455
  radA Streptococcus pneumoniae D39

50

91.06

0.455
  radA Streptococcus pneumoniae R6

50

91.06

0.455
  radA Streptococcus pneumoniae TIGR4

50

91.06

0.455
  radA Streptococcus mitis NCTC 12261

50

91.06

0.455
  radA Streptococcus mitis SK321

50

91.06

0.455