Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NM232_RS17925 Genome accession   NZ_CP101399
Coordinates   3349168..3349446 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain HM-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3344168..3354446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS17900 - 3344259..3344534 (-) 276 WP_008345136.1 hypothetical protein -
  NM232_RS17905 - 3344679..3346298 (+) 1620 WP_019743117.1 ABC-F family ATP-binding cassette domain-containing protein -
  NM232_RS17910 - 3346339..3347571 (-) 1233 WP_035700613.1 aminopeptidase -
  NM232_RS17915 - 3347678..3347809 (-) 132 WP_003210922.1 protein YkpC -
  NM232_RS17920 mreBH 3347884..3348891 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  NM232_RS17925 abrB 3349168..3349446 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NM232_RS17930 - 3349591..3350880 (+) 1290 WP_255233761.1 ATP-binding protein -
  NM232_RS17935 - 3350908..3351750 (+) 843 WP_035700616.1 gamma-glutamylcyclotransferase -
  NM232_RS17940 - 3351788..3352456 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=710019 NM232_RS17925 WP_017359400.1 3349168..3349446(+) (abrB) [Bacillus altitudinis strain HM-7]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=710019 NM232_RS17925 WP_017359400.1 3349168..3349446(+) (abrB) [Bacillus altitudinis strain HM-7]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543