Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NM232_RS17685 Genome accession   NZ_CP101399
Coordinates   3308649..3309110 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3303649..3314110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS17660 - 3304202..3305086 (+) 885 WP_048001615.1 cation diffusion facilitator family transporter -
  NM232_RS17665 - 3305151..3305303 (-) 153 WP_008348040.1 hypothetical protein -
  NM232_RS17670 - 3305604..3306143 (+) 540 WP_007498690.1 RDD family protein -
  NM232_RS17675 - 3306268..3307578 (+) 1311 WP_017359426.1 MFS transporter -
  NM232_RS17680 - 3307652..3308560 (+) 909 WP_008348035.1 chemotaxis protein -
  NM232_RS17685 kre 3308649..3309110 (-) 462 WP_008356877.1 YkyB family protein Regulator
  NM232_RS17690 - 3309330..3310226 (-) 897 WP_058213816.1 helix-turn-helix domain-containing protein -
  NM232_RS17695 - 3310340..3311272 (+) 933 WP_058213815.1 DMT family transporter -
  NM232_RS17700 - 3311442..3311657 (-) 216 WP_008348016.1 hypothetical protein -
  NM232_RS17705 - 3311825..3312001 (+) 177 WP_008348014.1 hypothetical protein -
  NM232_RS17710 - 3312229..3313506 (-) 1278 WP_058213814.1 MFS transporter -
  NM232_RS17715 - 3313580..3314077 (-) 498 WP_008348009.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=710017 NM232_RS17685 WP_008356877.1 3308649..3309110(-) (kre) [Bacillus altitudinis strain HM-7]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=710017 NM232_RS17685 WP_008356877.1 3308649..3309110(-) (kre) [Bacillus altitudinis strain HM-7]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765