Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NM232_RS16080 Genome accession   NZ_CP101399
Coordinates   3000594..3001172 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain HM-7     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995594..3006172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS16060 - 2996087..2997382 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  NM232_RS16065 - 2997474..2999006 (-) 1533 WP_065460080.1 FAD-dependent oxidoreductase -
  NM232_RS16070 - 2999149..3000009 (+) 861 WP_255233731.1 SDR family oxidoreductase -
  NM232_RS16075 - 3000068..3000304 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  NM232_RS16080 comK 3000594..3001172 (+) 579 WP_017366958.1 competence protein ComK Regulator
  NM232_RS16085 - 3001316..3002422 (+) 1107 Protein_3102 alanine racemase -
  NM232_RS16090 - 3002724..3003206 (+) 483 WP_146269903.1 hypothetical protein -
  NM232_RS16095 - 3003237..3004676 (-) 1440 WP_255233732.1 PLP-dependent aminotransferase family protein -
  NM232_RS16100 - 3004820..3005989 (+) 1170 WP_025207100.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=710004 NM232_RS16080 WP_017366958.1 3000594..3001172(+) (comK) [Bacillus altitudinis strain HM-7]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=710004 NM232_RS16080 WP_017366958.1 3000594..3001172(+) (comK) [Bacillus altitudinis strain HM-7]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATAATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATACGAAGTAACAGGAATATCTCATAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615