Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NM232_RS10440 Genome accession   NZ_CP101399
Coordinates   1947600..1947890 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942600..1952890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS10400 - 1942633..1942962 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  NM232_RS10405 - 1942975..1943415 (+) 441 WP_008341898.1 YaaR family protein -
  NM232_RS10410 holB 1943427..1944416 (+) 990 WP_065461504.1 DNA polymerase III subunit delta' -
  NM232_RS10415 - 1944419..1945246 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  NM232_RS10420 yabA 1945261..1945614 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  NM232_RS10425 - 1945670..1946413 (+) 744 WP_046527641.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NM232_RS10430 - 1946400..1946699 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  NM232_RS10435 rsmI 1946674..1947555 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NM232_RS10440 abrB 1947600..1947890 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NM232_RS10445 metG 1948410..1950410 (+) 2001 WP_039170321.1 methionine--tRNA ligase -
  NM232_RS10450 - 1950492..1951259 (+) 768 WP_017359325.1 TatD family hydrolase -
  NM232_RS10455 - 1951504..1952706 (+) 1203 WP_060831990.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=709995 NM232_RS10440 WP_087975202.1 1947600..1947890(-) (abrB) [Bacillus altitudinis strain HM-7]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=709995 NM232_RS10440 WP_087975202.1 1947600..1947890(-) (abrB) [Bacillus altitudinis strain HM-7]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATTGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938