Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NM232_RS02835 Genome accession   NZ_CP101399
Coordinates   479020..479790 (-) Length   256 a.a.
NCBI ID   WP_255233981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 474020..484790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS02815 - 474113..474934 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  NM232_RS02820 - 474960..475598 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  NM232_RS02825 glyS 475765..477810 (-) 2046 WP_017367621.1 glycine--tRNA ligase subunit beta -
  NM232_RS02830 glyQ 477803..478690 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  NM232_RS02835 recO 479020..479790 (-) 771 WP_255233981.1 DNA repair protein RecO Machinery gene
  NM232_RS02840 - 479826..479969 (-) 144 WP_008342408.1 YqzL family protein -
  NM232_RS02845 era 480117..481022 (-) 906 WP_255233982.1 GTPase Era -
  NM232_RS02850 - 481015..481413 (-) 399 WP_008342410.1 cytidine deaminase -
  NM232_RS02855 - 481526..481912 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  NM232_RS02860 ybeY 481890..482369 (-) 480 WP_255233983.1 rRNA maturation RNase YbeY -
  NM232_RS02865 - 482370..484460 (-) 2091 WP_173408463.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.09 Da        Isoelectric Point: 8.7129

>NTDB_id=709969 NM232_RS02835 WP_255233981.1 479020..479790(-) (recO) [Bacillus altitudinis strain HM-7]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDKCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=709969 NM232_RS02835 WP_255233981.1 479020..479790(-) (recO) [Bacillus altitudinis strain HM-7]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACAAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758