Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NM232_RS02500 Genome accession   NZ_CP101399
Coordinates   422831..423166 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 417831..428166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS02480 gcvT 418307..419404 (-) 1098 WP_019743009.1 glycine cleavage system aminomethyltransferase GcvT -
  NM232_RS02485 - 419966..421636 (+) 1671 WP_165378916.1 DEAD/DEAH box helicase -
  NM232_RS02490 - 421651..422448 (+) 798 WP_035702783.1 YqhG family protein -
  NM232_RS02495 - 422633..422797 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  NM232_RS02500 sinR 422831..423166 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  NM232_RS02505 tasA 423234..424034 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  NM232_RS02510 sipW 424093..424665 (-) 573 WP_255233976.1 signal peptidase I SipW -
  NM232_RS02515 tapA 424715..425242 (-) 528 WP_255233977.1 amyloid fiber anchoring/assembly protein TapA -
  NM232_RS02520 - 425495..425821 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  NM232_RS02525 - 425856..426050 (-) 195 WP_008342191.1 YqzE family protein -
  NM232_RS02530 comGG 426111..426494 (-) 384 WP_046343972.1 competence type IV pilus minor pilin ComGG -
  NM232_RS02535 comGF 426491..426988 (-) 498 WP_046343974.1 competence type IV pilus minor pilin ComGF -
  NM232_RS02540 comGE 426930..427244 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  NM232_RS02545 comGD 427228..427674 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  NM232_RS02550 comGC 427667..427960 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=709966 NM232_RS02500 WP_017357978.1 422831..423166(+) (sinR) [Bacillus altitudinis strain HM-7]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=709966 NM232_RS02500 WP_017357978.1 422831..423166(+) (sinR) [Bacillus altitudinis strain HM-7]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928