Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NM232_RS01355 Genome accession   NZ_CP101399
Coordinates   214456..215091 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain HM-7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 209456..220091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS01315 - 209620..210738 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  NM232_RS01320 - 210788..211294 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  NM232_RS01325 - 211463..211882 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  NM232_RS01330 - 211904..212356 (-) 453 WP_017359729.1 YppG family protein -
  NM232_RS01335 - 212465..212836 (-) 372 WP_017359730.1 YppE family protein -
  NM232_RS01340 - 212895..213131 (-) 237 WP_008344612.1 DUF5446 family protein -
  NM232_RS01345 sspM 213325..213429 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  NM232_RS01350 - 213453..214409 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  NM232_RS01355 recU 214456..215091 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  NM232_RS01360 - 215111..217798 (+) 2688 WP_025207532.1 PBP1A family penicillin-binding protein -
  NM232_RS01365 - 217834..218343 (-) 510 WP_079920154.1 YpoC family protein -
  NM232_RS01370 nth 218340..219002 (-) 663 WP_008344602.1 endonuclease III -
  NM232_RS01375 - 219020..219724 (-) 705 WP_008344601.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=709963 NM232_RS01355 WP_017359733.1 214456..215091(+) (recU) [Bacillus altitudinis strain HM-7]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=709963 NM232_RS01355 WP_017359733.1 214456..215091(+) (recU) [Bacillus altitudinis strain HM-7]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697