Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J58_RS01830 Genome accession   NZ_AP018772
Coordinates   369675..369971 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain CHBN-III-1 isolate 15H02     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 364675..374971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J58_RS08970 - 366197..366325 (+) 129 Protein_354 PT domain-containing protein -
  K6J58_RS01820 (CHBNIII1_03540) - 366264..369230 (+) 2967 WP_112075269.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J58_RS01825 (CHBNIII1_03550) - 369500..369682 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J58_RS01830 (CHBNIII1_03560) HI0659 369675..369971 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J58_RS01835 (CHBNIII1_03570) - 370155..372071 (+) 1917 WP_005688147.1 ABC transporter ATP-binding protein -
  K6J58_RS01840 (CHBNIII1_03580) - 372081..372617 (+) 537 WP_005688146.1 type I DNA topoisomerase -
  K6J58_RS01845 (CHBNIII1_03590) - 372633..373184 (+) 552 WP_005688145.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J58_RS01850 (CHBNIII1_03600) aroE 373188..373994 (+) 807 WP_005688144.1 shikimate dehydrogenase -
  K6J58_RS01855 (CHBNIII1_03610) - 374006..374797 (+) 792 WP_005688143.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=70991 K6J58_RS01830 WP_005650837.1 369675..369971(+) (HI0659) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=70991 K6J58_RS01830 WP_005650837.1 369675..369971(+) (HI0659) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment