Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PFZ59_RS12275 Genome accession   NZ_CP116393
Coordinates   2410151..2411812 (-) Length   553 a.a.
NCBI ID   WP_277697195.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2405151..2416812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS12250 (PFZ59_12250) - 2406026..2407282 (-) 1257 WP_277697822.1 ISL3 family transposase -
  PFZ59_RS12255 (PFZ59_12255) - 2407465..2407740 (-) 276 WP_277697193.1 HU family DNA-binding protein -
  PFZ59_RS12260 (PFZ59_12260) - 2407830..2408426 (-) 597 WP_208582322.1 YpmS family protein -
  PFZ59_RS12265 (PFZ59_12265) - 2408398..2409231 (-) 834 WP_208582323.1 SGNH/GDSL hydrolase family protein -
  PFZ59_RS12270 (PFZ59_12270) - 2409224..2410057 (-) 834 WP_277697194.1 DegV family protein -
  PFZ59_RS12275 (PFZ59_12275) recN 2410151..2411812 (-) 1662 WP_277697195.1 DNA repair protein RecN Machinery gene
  PFZ59_RS12280 (PFZ59_12280) - 2411815..2412240 (-) 426 WP_024385020.1 arginine repressor -
  PFZ59_RS12285 (PFZ59_12285) - 2412233..2413054 (-) 822 WP_277697196.1 TlyA family RNA methyltransferase -
  PFZ59_RS12290 (PFZ59_12290) - 2413047..2413916 (-) 870 WP_208582325.1 polyprenyl synthetase family protein -
  PFZ59_RS12295 (PFZ59_12295) - 2413916..2414131 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  PFZ59_RS12300 (PFZ59_12300) xseA 2414106..2415449 (-) 1344 WP_208582327.1 exodeoxyribonuclease VII large subunit -
  PFZ59_RS12305 (PFZ59_12305) - 2415616..2416524 (+) 909 WP_029186525.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62753.01 Da        Isoelectric Point: 4.6837

>NTDB_id=709902 PFZ59_RS12275 WP_277697195.1 2410151..2411812(-) (recN) [Streptococcus suis strain SS/UPM/MY/F001]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHVRLLDSFGEDEFWAIKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRLAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVHLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=709902 PFZ59_RS12275 WP_277697195.1 2410151..2411812(-) (recN) [Streptococcus suis strain SS/UPM/MY/F001]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAATCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAAATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATTCGTCGGGAAATCCTACAAAATGGCCGTTCGGTTAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCACGGCCAGCATGACCAGG
AAGAATTGATGAAGTCCCAGCACCATGTCCGTTTATTAGACAGCTTTGGCGAAGACGAGTTTTGGGCTATAAAAGACCGC
TATCAAACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGCGATAAACTACTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTTAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGCCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGTGATGATTT
AGAAGTTCATCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAACCACTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGTTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGGCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448