Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PFZ59_RS09720 Genome accession   NZ_CP116393
Coordinates   1936788..1938524 (-) Length   578 a.a.
NCBI ID   WP_277696958.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931788..1943524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS09705 (PFZ59_09705) - 1932639..1933925 (-) 1287 WP_277696955.1 homoserine dehydrogenase -
  PFZ59_RS09710 (PFZ59_09710) - 1934030..1934953 (+) 924 WP_205041211.1 polysaccharide deacetylase family protein -
  PFZ59_RS09715 (PFZ59_09715) rcrQ 1935010..1936779 (-) 1770 WP_277696957.1 ABC transporter ATP-binding protein Regulator
  PFZ59_RS09720 (PFZ59_09720) rcrP 1936788..1938524 (-) 1737 WP_277696958.1 ABC transporter ATP-binding protein Regulator
  PFZ59_RS09725 (PFZ59_09725) - 1938600..1938842 (-) 243 WP_012028079.1 KH domain-containing protein -
  PFZ59_RS09730 (PFZ59_09730) rpsP 1938864..1939136 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  PFZ59_RS09735 (PFZ59_09735) - 1939260..1939568 (-) 309 WP_277696959.1 DUF4298 domain-containing protein -
  PFZ59_RS09740 (PFZ59_09740) pcp 1939568..1940215 (-) 648 WP_277696960.1 pyroglutamyl-peptidase I -
  PFZ59_RS09745 (PFZ59_09745) - 1940212..1940973 (-) 762 WP_277696961.1 class I SAM-dependent methyltransferase -
  PFZ59_RS09750 (PFZ59_09750) - 1941044..1941229 (-) 186 WP_050572862.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65048.36 Da        Isoelectric Point: 5.1891

>NTDB_id=709893 PFZ59_RS09720 WP_277696958.1 1936788..1938524(-) (rcrP) [Streptococcus suis strain SS/UPM/MY/F001]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVGQLYYWAGMMGLIVLLGIVGRITLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVIVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFATVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=709893 PFZ59_RS09720 WP_277696958.1 1936788..1938524(-) (rcrP) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTAGGGGCCTTCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAAAATGATGTTGGCCAGCTCTATT
ACTGGGCGGGAATGATGGGCTTGATCGTCTTGCTTGGAATTGTTGGACGAATAACGCTTGCCTATGCAGCTGGAAAATTA
ACTACCAATATCGTCAAAGATATTCGAAATGATTTGTACGAGAAAATTCAGGACTACTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACCAATGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCCTCTGTCATCATGACCTTGGTAACTAGTCCAAGTCTGGCTTGGACAGTCGCA
GTAGCCATGCCGTTTCTTGTTATCGTTATTTTCTATGTAGCAACCAAAACCCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGATACCATTAACCAATATGTTCGTGAAAACCTCATGGGCTTACGTGTCATTCGGGCATTTACTCGGGAAGAATTTC
AGGAAGAGCGTTTTGCGACAGTAAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGATCCTTTGCAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGGGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCCGATATTTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTGATTGTTGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398