Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PFZ59_RS09715 Genome accession   NZ_CP116393
Coordinates   1935010..1936779 (-) Length   589 a.a.
NCBI ID   WP_277696957.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930010..1941779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS09695 (PFZ59_09695) murB 1930632..1931540 (-) 909 WP_277696954.1 UDP-N-acetylmuramate dehydrogenase -
  PFZ59_RS09700 (PFZ59_09700) thrB 1931775..1932635 (-) 861 WP_011922331.1 homoserine kinase -
  PFZ59_RS09705 (PFZ59_09705) - 1932639..1933925 (-) 1287 WP_277696955.1 homoserine dehydrogenase -
  PFZ59_RS09710 (PFZ59_09710) - 1934030..1934953 (+) 924 WP_205041211.1 polysaccharide deacetylase family protein -
  PFZ59_RS09715 (PFZ59_09715) rcrQ 1935010..1936779 (-) 1770 WP_277696957.1 ABC transporter ATP-binding protein Regulator
  PFZ59_RS09720 (PFZ59_09720) rcrP 1936788..1938524 (-) 1737 WP_277696958.1 ABC transporter ATP-binding protein Regulator
  PFZ59_RS09725 (PFZ59_09725) - 1938600..1938842 (-) 243 WP_012028079.1 KH domain-containing protein -
  PFZ59_RS09730 (PFZ59_09730) rpsP 1938864..1939136 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  PFZ59_RS09735 (PFZ59_09735) - 1939260..1939568 (-) 309 WP_277696959.1 DUF4298 domain-containing protein -
  PFZ59_RS09740 (PFZ59_09740) pcp 1939568..1940215 (-) 648 WP_277696960.1 pyroglutamyl-peptidase I -
  PFZ59_RS09745 (PFZ59_09745) - 1940212..1940973 (-) 762 WP_277696961.1 class I SAM-dependent methyltransferase -
  PFZ59_RS09750 (PFZ59_09750) - 1941044..1941229 (-) 186 WP_050572862.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65748.81 Da        Isoelectric Point: 5.5767

>NTDB_id=709892 PFZ59_RS09715 WP_277696957.1 1935010..1936779(-) (rcrQ) [Streptococcus suis strain SS/UPM/MY/F001]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVDGAQINYSYIAIMLAIYALR
ALMYEIGAYGSTYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDEIDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=709892 PFZ59_RS09715 WP_277696957.1 1935010..1936779(-) (rcrQ) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTATTGGGGCTTATCATCACAGAATTGACCAAGAATCTGT
TGGATATGGCAAATGGAGTAGACGGAGCGCAGATTAACTATTCCTACATTGCTATCATGCTTGCCATCTATGCACTTCGT
GCCCTTATGTATGAAATCGGCGCCTATGGTTCTACCTATTTCATGACTAAGGCGGTACAGGGAGCAACCAAGGAACTGCG
GCAGGATTTGAGTCACAAGATTAACAAAATTCCCGTTTCCTATTTTGATAAACACCAGTATGGTGACCTATTAGGTCGAT
TTACAAGTGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGCTTTCTCCAGCTCGTCAATGCTGTACTAACCCTTTCT
TTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCAGGCTTGCTCATGCCCCTGGTACACGGTTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTTTGAAAGTTCTTGCAGGTACATTGACAGTTGGTAATATGCAGGCCTTCG
TCCAATACGTTTGGCAGATTTCTCAGCCCGTCCAAACCTTGACCCAGTTGGCTCCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGATTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGCTAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTTGAATTCGGCTATTCAGAAGACAAACCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTCGGAATATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCCTGGCTCTACGAAGGGACCATCAAAGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAAGCTGCCAAAGCCGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACTATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCAACTTCTTCAGTTGATACTCGTTTGGAACTATTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCCCACCGTTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAGGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436