Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   PFZ59_RS08840 Genome accession   NZ_CP116393
Coordinates   1756523..1759789 (+) Length   1088 a.a.
NCBI ID   WP_277696871.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751523..1764789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS08815 (PFZ59_08815) - 1752517..1752678 (+) 162 WP_277696870.1 hypothetical protein -
  PFZ59_RS08820 (PFZ59_08820) - 1752850..1752978 (+) 129 WP_002943675.1 DUF4044 domain-containing protein -
  PFZ59_RS08825 (PFZ59_08825) obgE 1753183..1754496 (+) 1314 WP_032504854.1 GTPase ObgE -
  PFZ59_RS08830 (PFZ59_08830) - 1754757..1754921 (+) 165 WP_014638044.1 hypothetical protein -
  PFZ59_RS08840 (PFZ59_08840) rexB 1756523..1759789 (+) 3267 WP_277696871.1 ATP-dependent nuclease subunit B Machinery gene
  PFZ59_RS08845 (PFZ59_08845) rexA 1759789..1763439 (+) 3651 WP_277696872.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  PFZ59_RS08850 (PFZ59_08850) plsY 1763664..1764308 (-) 645 WP_024406229.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124623.00 Da        Isoelectric Point: 5.1272

>NTDB_id=709885 PFZ59_RS08840 WP_277696871.1 1756523..1759789(+) (rexB) [Streptococcus suis strain SS/UPM/MY/F001]
MKLVYTDIRNPLTQYLTDTAAEFAKEAKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSQFDDGDLKVYGRLQTDFGFINQLVALYKELKRANMSILDLEAMESPDKQADLIKIFLAVTDILSK
EGFEYQSKLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEIMIGVYASKKAMQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKILDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
ELDLFESYILFTDMKGQAAFSRAFSVNGRADYDVETVKEKRLVYDLNVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMA
FLEAIELPKNMEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLEHEEWEGQMAFWTVLVRHLKKK
LESQGIEIPTITGEITSKQLAADTLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSDLDFDQKVDKAILHTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDSQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNIEQLEGAVNTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAKDILDGRFPINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=709885 PFZ59_RS08840 WP_277696871.1 1756523..1759789(+) (rexB) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTAACGGATACCGCAGCAGAATTTGCTAAGGAAGC
TAAGCGAGTTTTTTACATTGCTCCAAACTCTCTATCCTTTGAGATGGAGCGCAAGGTCTTGGAATATTTGCCTGAACAGG
CAACTTTTGATATTATCGTGACTCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTGGCTATGATTTTCTTTCGTGTTCTATCGCAATTTGATGATGGCGACTTGAAAGTCTATGGTCG
TTTACAGACAGATTTTGGGTTTATTAACCAGCTAGTTGCTTTATACAAAGAATTGAAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGAGTCACCAGATAAGCAGGCTGATTTGATAAAGATTTTTCTGGCTGTAACAGACATTTTGTCCAAA
GAAGGCTTTGAGTATCAGTCTAAGTTAGCACAGCTGACTAGCTTGGTGGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTACTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGAGTGT
CGGAAATTATGATTGGTGTATATGCCAGCAAGAAAGCTATGCAAGCCACCTATGCGGAAGGGAACGTTTATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACGAAGGCTACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
TGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGATAGACTTGACTCCAGCTGACCAAGAAA
AAATCCAGCTATGGGAGGTTGTTAACCAAAAAGAAGAGGTGGAGCAGGTTGCGACTGCGATTCGTCAGCATGTGCATCAA
GGGGCTCGCTATAAAGATATTTTGTTGCTCTTGGGTGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTCTTGACAA
GTATGATATTCCTTACTATTTCGGCAAGGCAGAGGAGATGAGTCATCATCCCCTGGTCCACTTTGTGGAGTCCTTGGAGC
GCTTGCGTCGCTATCGTTTCCGTGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTTTTTACGGATATGAAGGGGCAGGCTGCTTTTTCGAGGGCTTTTTCGGTCAA
TGGCAGAGCGGACTACGATGTTGAGACTGTCAAGGAGAAGCGACTTGTCTATGATTTGAATGTCTTGGAACCACTACGTG
CTAAGATTATGGAACCTTTGAACCAGCTGTTTAAGGCCGGACCACAATCTGGAACTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGAGCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGTGAGGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTCACCCATATTCTAGAGAATTTTCATCAGATTTTCGGAAAAGAAAAATTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCCGGCATGCAGGCTAGTCACTATCGTACCGTTCCAGCAACGGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCGCACACTGCTAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
TAAGAATACCAGCCTATTGACAGAAGAAGAGATGGAAAAAGTCAATCTTGTTTCGGCTAGTTCTTCACGTTTCGATTTGG
TCAGCCGTGAAAATATCAAGAAGAACCATGCTGCCATGATGTCTCTGCTGAATGCTGCAACGGAACAGTTAGTCATTTCA
ACACCTCAGATTTATAACGAAGGTGAAGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGCTGAAATCCGA
AGAACGTGGTCGGATTAAAACACTTAGTCCACAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCAG
AAAGACCCTCTCTTGAACATGAAGAATGGGAAGGGCAGATGGCCTTCTGGACAGTCTTGGTTCGTCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACAGGCGAAATTACTTCTAAACAGCTTGCAGCTGATACCTTGGCTGC
TTTATATCCAGAGGATAAGCCGCTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAACAACCAATATCTTTACTTTG
TCCGCAATGTTCTGCGATTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGAATT
TTTGAACGAGTGGTCATGGACCAATCTGATCTAGATTTTGATCAAAAAGTGGACAAGGCTATCCTGCATACGCGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAAGATGCGGATGCTCGCTATACGGAGGAGGTGCTGGATAAGATTGCTCGTTCCA
GTGCGACTATTTTGCGGGATAATGATTTAGTTGAAATTGATAGTCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTGGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACAATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGCGACCAATCTTTTTCAGTTGGGGATTTTTACAACGGTCTAAAACCTCAGTTGGTGA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAAGATAAACCTGTTTTTGGAGCCATGTATTTGCATTTGCAGGAT
CCAATTATCAAATTAAAAGACACGAAGAATATAGAACAGCTAGAAGGAGCTGTCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTATACGGAAGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTCTACAAACAAGCTGCCAAGGACATCCTGGATGGTCGCTTTCCTATTAATCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGCTGGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1042)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

45.118

100

0.459