Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   PFZ59_RS03445 Genome accession   NZ_CP116393
Coordinates   660517..661095 (+) Length   192 a.a.
NCBI ID   WP_277697489.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 655517..666095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS03435 (PFZ59_03435) - 656310..657413 (+) 1104 WP_136628023.1 hypothetical protein -
  PFZ59_RS03440 (PFZ59_03440) leuS 657806..660307 (+) 2502 WP_277697488.1 leucine--tRNA ligase -
  PFZ59_RS03445 (PFZ59_03445) lytF 660517..661095 (+) 579 WP_277697489.1 CHAP domain-containing protein Regulator
  PFZ59_RS03450 (PFZ59_03450) - 661221..661490 (+) 270 Protein_622 amino acid ABC transporter ATP-binding protein -
  PFZ59_RS03455 (PFZ59_03455) - 661676..662503 (+) 828 WP_277697490.1 hypothetical protein -
  PFZ59_RS03460 (PFZ59_03460) - 662534..662863 (+) 330 WP_277696633.1 IS630 transposase-related protein -
  PFZ59_RS03465 (PFZ59_03465) - 662937..663383 (+) 447 WP_277697757.1 transposase -
  PFZ59_RS03470 (PFZ59_03470) - 663562..664428 (+) 867 WP_277697491.1 LPXTG cell wall anchor domain-containing protein -
  PFZ59_RS03475 (PFZ59_03475) - 664699..665640 (+) 942 WP_002939863.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20135.78 Da        Isoelectric Point: 5.6978

>NTDB_id=709849 PFZ59_RS03445 WP_277697489.1 660517..661095(+) (lytF) [Streptococcus suis strain SS/UPM/MY/F001]
MSYQMIKKQFKLGLFTALIGNILWLGMVNVSADDTVISDSPTVSALTKKVEAAKIAAKAATAAKAALATNMVSEVAVEYT
ANTYPAGQCTWGAKEMAPWVGNYWGNGGDWVASAAALGYEVGTTPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKESNY
GGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV

Nucleotide


Download         Length: 579 bp        

>NTDB_id=709849 PFZ59_RS03445 WP_277697489.1 660517..661095(+) (lytF) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAGTTATCAAATGATAAAAAAACAATTCAAATTGGGACTGTTTACAGCCCTCATAGGAAATATTTTATGGTTGGGAAT
GGTGAATGTCAGTGCAGATGACACAGTTATAAGCGATAGTCCGACAGTATCAGCGTTAACAAAAAAGGTTGAAGCTGCAA
AAATAGCAGCCAAAGCTGCTACCGCTGCAAAGGCTGCTTTGGCTACCAATATGGTGTCAGAGGTTGCTGTGGAATATACG
GCTAATACCTATCCAGCTGGTCAGTGTACTTGGGGTGCCAAAGAAATGGCTCCTTGGGTTGGAAACTATTGGGGTAATGG
TGGAGATTGGGTAGCTAGTGCGGCAGCGCTTGGATATGAAGTGGGAACTACTCCAAAAGTTGGCGCTATTGCTGTATGGA
CAGATGGAGGCTACGGTCATGTTGCCTATGTAACAGATGTGGCAGCTAACGGGCACATTCAAGTTAAGGAATCAAACTAT
GGTGGAGTATACTACCCAAGTAATGTCCGAGGTTTCTTTGATCCAACAACGACTAGTGAAGGAACAGTCAGCTATATTTA
CCCACCAGCTGGAGTATAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(81-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

65.741

56.25

0.37
  lytF Streptococcus gordonii str. Challis substr. CH1

65.741

56.25

0.37