Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PFZ59_RS02585 Genome accession   NZ_CP116393
Coordinates   507945..508727 (-) Length   260 a.a.
NCBI ID   WP_277697432.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 502945..513727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS02570 (PFZ59_02570) purC 505875..506582 (-) 708 WP_208581878.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  PFZ59_RS02575 (PFZ59_02575) - 506700..506948 (-) 249 WP_014637254.1 phosphopantetheine-binding protein -
  PFZ59_RS02580 (PFZ59_02580) plsX 506941..507948 (-) 1008 WP_277697431.1 phosphate acyltransferase PlsX -
  PFZ59_RS02585 (PFZ59_02585) recO 507945..508727 (-) 783 WP_277697432.1 DNA repair protein RecO Machinery gene
  PFZ59_RS02590 (PFZ59_02590) - 508714..509892 (-) 1179 WP_023368972.1 pyridoxal phosphate-dependent aminotransferase -
  PFZ59_RS02595 (PFZ59_02595) - 509979..510947 (-) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  PFZ59_RS02600 (PFZ59_02600) - 511050..512306 (-) 1257 WP_277697433.1 CHAP domain-containing protein -
  PFZ59_RS02605 (PFZ59_02605) mreD 512391..512906 (-) 516 WP_024385106.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30411.89 Da        Isoelectric Point: 5.0635

>NTDB_id=709839 PFZ59_RS02585 WP_277697432.1 507945..508727(-) (recO) [Streptococcus suis strain SS/UPM/MY/F001]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKYASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKA
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEILTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKSEMKQKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=709839 PFZ59_RS02585 WP_277697432.1 507945..508727(-) (recO) [Streptococcus suis strain SS/UPM/MY/F001]
ATGGAACGAATTGAAACTAGGGGATTAGTCCTTTACAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTTGTGAAATATGCTTCCAAGTCCAAGCTAGTTGCTTCTATTCAGCCCTTGACCT
ATGCGGATTTTATTGTCAAAATCAATGATGACGGTCTGTCTTATATCGAAGATTTTCATCAGGTGCAACCTTTTAAGGCA
ATCAATGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGAATCAGTCTGAATTTTCATGAGTGTGCTTTTTGTCACCGAGTAGGTCTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGTCTGAGA
TGAAGCAAAAATTACGGCTTTTTATTGACCAGTTGTACGAGGAATATGTAGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665