Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PFZ59_RS00195 Genome accession   NZ_CP116393
Coordinates   31872..32489 (+) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26872..37489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS00165 (PFZ59_00165) - 26970..27452 (+) 483 WP_004194159.1 S-ribosylhomocysteine lyase -
  PFZ59_RS00170 (PFZ59_00170) - 27674..29128 (-) 1455 WP_208581451.1 cell division site-positioning protein MapZ family protein -
  PFZ59_RS00175 (PFZ59_00175) - 29138..30304 (-) 1167 WP_277697220.1 class I SAM-dependent RNA methyltransferase -
  PFZ59_RS00185 (PFZ59_00185) gpsB 30861..31196 (-) 336 WP_024417377.1 cell division regulator GpsB -
  PFZ59_RS00190 (PFZ59_00190) - 31267..31806 (-) 540 WP_024406404.1 DUF1273 domain-containing protein -
  PFZ59_RS00195 (PFZ59_00195) recU 31872..32489 (+) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  PFZ59_RS00200 (PFZ59_00200) pbp1a 32470..34644 (+) 2175 WP_277697221.1 penicillin-binding protein PBP1A -
  PFZ59_RS00205 (PFZ59_00205) rsmG 34703..35416 (+) 714 WP_004195222.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  PFZ59_RS00210 (PFZ59_00210) - 35562..35765 (-) 204 WP_024413693.1 cold-shock protein -
  PFZ59_RS00215 (PFZ59_00215) - 35925..36758 (-) 834 WP_277697222.1 energy-coupling factor transporter transmembrane component T -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=709814 PFZ59_RS00195 WP_004194173.1 31872..32489(+) (recU) [Streptococcus suis strain SS/UPM/MY/F001]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=709814 PFZ59_RS00195 WP_004194173.1 31872..32489(+) (recU) [Streptococcus suis strain SS/UPM/MY/F001]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAGGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTAAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473