Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PIB33_RS21880 Genome accession   NZ_CP116391
Coordinates   4161681..4162475 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain GXD-20     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4156681..4167475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS21855 (PIB33_21855) - 4157794..4158477 (-) 684 WP_024573086.1 response regulator transcription factor -
  PIB33_RS21860 (PIB33_21860) - 4158689..4159588 (+) 900 WP_015250814.1 PepSY domain-containing protein -
  PIB33_RS21865 (PIB33_21865) - 4159749..4160249 (+) 501 WP_032722795.1 PepSY domain-containing protein -
  PIB33_RS21870 (PIB33_21870) - 4160246..4160376 (-) 131 Protein_4258 hypothetical protein -
  PIB33_RS21875 (PIB33_21875) htrA 4160397..4161599 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  PIB33_RS21880 (PIB33_21880) vicX 4161681..4162475 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  PIB33_RS21885 (PIB33_21885) walI 4162497..4163339 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  PIB33_RS21890 (PIB33_21890) walH 4163326..4164693 (-) 1368 WP_032722849.1 WalRK two-component regulatory system regulator WalH -
  PIB33_RS21895 (PIB33_21895) walK 4164683..4166518 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  PIB33_RS21900 (PIB33_21900) walR 4166526..4167233 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=709805 PIB33_RS21880 WP_003226939.1 4161681..4162475(-) (vicX) [Bacillus subtilis strain GXD-20]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=709805 PIB33_RS21880 WP_003226939.1 4161681..4162475(-) (vicX) [Bacillus subtilis strain GXD-20]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AACGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTAAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53