Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PIB33_RS21530 Genome accession   NZ_CP116391
Coordinates   4089168..4089857 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain GXD-20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4084168..4094857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS21510 (PIB33_21510) yxeA 4085073..4085420 (-) 348 WP_003227084.1 YxeA family protein -
  PIB33_RS21515 (PIB33_21515) yxdM 4085434..4087302 (-) 1869 WP_032722764.1 ABC transporter permease YxdM -
  PIB33_RS21520 (PIB33_21520) yxdL 4087277..4088050 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  PIB33_RS21525 (PIB33_21525) yxdK 4088194..4089171 (-) 978 WP_019712858.1 two-component system sensor histidine kinase YxdK -
  PIB33_RS21530 (PIB33_21530) braR 4089168..4089857 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  PIB33_RS21535 (PIB33_21535) iolJ 4089965..4090837 (-) 873 WP_019712596.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  PIB33_RS21540 (PIB33_21540) iolI 4090858..4091694 (-) 837 WP_019712597.1 2-keto-myo-inositol isomerase -
  PIB33_RS21545 (PIB33_21545) iolH 4091780..4092649 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  PIB33_RS21550 (PIB33_21550) iolG 4092669..4093703 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=709802 PIB33_RS21530 WP_003243527.1 4089168..4089857(-) (braR) [Bacillus subtilis strain GXD-20]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=709802 PIB33_RS21530 WP_003243527.1 4089168..4089857(-) (braR) [Bacillus subtilis strain GXD-20]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAAATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406