Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PIB33_RS18980 Genome accession   NZ_CP116391
Coordinates   3583414..3584127 (-) Length   237 a.a.
NCBI ID   WP_032722590.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3578414..3589127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS18960 (PIB33_18960) ghrB 3578558..3579535 (+) 978 WP_080287632.1 D-glycerate dehydrogenase -
  PIB33_RS18965 (PIB33_18965) psdB 3579573..3581513 (-) 1941 WP_032722585.1 lantibiotic ABC transporter permease PsdB -
  PIB33_RS18970 (PIB33_18970) psdA 3581488..3582267 (-) 780 WP_032722587.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  PIB33_RS18975 (PIB33_18975) psdS 3582350..3583420 (-) 1071 WP_032722588.1 two-component sensor histidine kinase PsdS -
  PIB33_RS18980 (PIB33_18980) braR 3583414..3584127 (-) 714 WP_032722590.1 two-component system response regulator PsdR Regulator
  PIB33_RS18985 (PIB33_18985) - 3584274..3584483 (+) 210 WP_029318346.1 hypothetical protein -
  PIB33_RS18990 (PIB33_18990) yvcN 3584519..3585283 (-) 765 WP_080287633.1 arylamine N-acetyltransferase -
  PIB33_RS18995 (PIB33_18995) crh 3585284..3585541 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  PIB33_RS19000 (PIB33_19000) whiA 3585565..3586515 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  PIB33_RS19005 (PIB33_19005) mgfK 3586538..3587491 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  PIB33_RS19010 (PIB33_19010) rapZ 3587493..3588380 (-) 888 WP_003243903.1 RNase adapter RapZ -
  PIB33_RS19015 (PIB33_19015) rppI 3588405..3588881 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27496.36 Da        Isoelectric Point: 4.6062

>NTDB_id=709787 PIB33_RS18980 WP_032722590.1 3583414..3584127(-) (braR) [Bacillus subtilis strain GXD-20]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVIAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=709787 PIB33_RS18980 WP_032722590.1 3583414..3584127(-) (braR) [Bacillus subtilis strain GXD-20]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATAGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.982

94.515

0.435