Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PIB33_RS17410 Genome accession   NZ_CP116391
Coordinates   3267639..3268283 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   G4P056
Organism   Bacillus subtilis strain GXD-20     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3262639..3273283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS17375 (PIB33_17375) mrpB 3263831..3264262 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  PIB33_RS17380 (PIB33_17380) mrpC 3264262..3264603 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PIB33_RS17385 (PIB33_17385) mrpD 3264596..3266077 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  PIB33_RS17390 (PIB33_17390) mrpE 3266083..3266559 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  PIB33_RS17395 (PIB33_17395) mrpF 3266559..3266843 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PIB33_RS17400 (PIB33_17400) mnhG 3266827..3267201 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  PIB33_RS17405 (PIB33_17405) yuxO 3267240..3267620 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  PIB33_RS17410 (PIB33_17410) comA 3267639..3268283 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PIB33_RS17415 (PIB33_17415) comP 3268364..3270676 (-) 2313 WP_304988957.1 histidine kinase Regulator
  PIB33_RS17420 (PIB33_17420) comX 3270692..3270913 (-) 222 WP_014480704.1 competence pheromone ComX -
  PIB33_RS17425 (PIB33_17425) comQ 3270915..3271778 (-) 864 WP_032722437.1 polyprenyl synthetase family protein Regulator
  PIB33_RS17430 (PIB33_17430) degQ 3271963..3272103 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PIB33_RS17435 (PIB33_17435) - 3272325..3272450 (+) 126 WP_003228793.1 hypothetical protein -
  PIB33_RS17440 (PIB33_17440) - 3272564..3272932 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=709778 PIB33_RS17410 WP_003220716.1 3267639..3268283(-) (comA) [Bacillus subtilis strain GXD-20]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=709778 PIB33_RS17410 WP_003220716.1 3267639..3268283(-) (comA) [Bacillus subtilis strain GXD-20]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P056

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1