Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PIB33_RS16430 Genome accession   NZ_CP116391
Coordinates   3086227..3086937 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081227..3091937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS16410 (PIB33_16410) cysK 3081279..3082214 (+) 936 WP_003229237.1 cysteine synthase A -
  PIB33_RS16415 (PIB33_16415) pepV 3082248..3083639 (-) 1392 WP_032722355.1 dipeptidase PepV -
  PIB33_RS16420 (PIB33_16420) pbuO 3083736..3085034 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  PIB33_RS16425 (PIB33_16425) ythQ 3085073..3086230 (-) 1158 WP_032722356.1 ABC transporter permease -
  PIB33_RS16430 (PIB33_16430) pptA 3086227..3086937 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  PIB33_RS16435 (PIB33_16435) ytzE 3087227..3087448 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  PIB33_RS16440 (PIB33_16440) rsuA 3087570..3088289 (-) 720 WP_029318266.1 pseudouridine synthase -
  PIB33_RS16445 (PIB33_16445) murJ 3088358..3089992 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  PIB33_RS16450 (PIB33_16450) ytfP 3090196..3091458 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=709776 PIB33_RS16430 WP_015714539.1 3086227..3086937(-) (pptA) [Bacillus subtilis strain GXD-20]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=709776 PIB33_RS16430 WP_015714539.1 3086227..3086937(-) (pptA) [Bacillus subtilis strain GXD-20]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTGATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432