Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PIB33_RS10505 Genome accession   NZ_CP116391
Coordinates   2014201..2014818 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain GXD-20     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2009201..2019818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS10475 (PIB33_10475) yndJ 2009515..2011155 (+) 1641 WP_003231612.1 YndJ family protein -
  PIB33_RS10480 (PIB33_10480) - 2011243..2011557 (+) 315 WP_003245621.1 hypothetical protein -
  PIB33_RS10485 (PIB33_10485) pghL 2011783..2012541 (+) 759 WP_003245793.1 gamma-polyglutamate hydrolase PghL -
  PIB33_RS10490 (PIB33_10490) - 2012568..2013017 (-) 450 WP_003245454.1 YndM family protein -
  PIB33_RS10495 (PIB33_10495) fosM 2013225..2013659 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  PIB33_RS10500 (PIB33_10500) - 2013568..2013864 (+) 297 WP_223257629.1 hypothetical protein -
  PIB33_RS10505 (PIB33_10505) dinR/lexA 2014201..2014818 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  PIB33_RS10510 (PIB33_10510) yneA 2014968..2015285 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  PIB33_RS10515 (PIB33_10515) dinL 2015304..2015957 (+) 654 WP_003231596.1 recombinase family protein -
  PIB33_RS10520 (PIB33_10520) ynzC 2016021..2016254 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  PIB33_RS10525 (PIB33_10525) recP/tkt 2016423..2018426 (+) 2004 WP_003231593.1 transketolase Machinery gene
  PIB33_RS10530 (PIB33_10530) sirA 2018579..2019025 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  PIB33_RS10535 (PIB33_10535) yneF 2019111..2019329 (+) 219 WP_003221221.1 YneF family protein -
  PIB33_RS10540 (PIB33_10540) ynzD 2019403..2019576 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=709735 PIB33_RS10505 WP_003238209.1 2014201..2014818(-) (dinR/lexA) [Bacillus subtilis strain GXD-20]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=709735 PIB33_RS10505 WP_003238209.1 2014201..2014818(-) (dinR/lexA) [Bacillus subtilis strain GXD-20]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGTTCTACTGTCCACGGCCATTTGGCCCGTTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1