Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NM059_RS14300 Genome accession   NZ_CP101365
Coordinates   2885261..2885866 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SC2014107     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2880261..2890866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM059_RS14285 (NM059_14285) helD 2880478..2882532 (-) 2055 WP_079798558.1 DNA helicase IV -
  NM059_RS14290 (NM059_14290) - 2882656..2883102 (+) 447 WP_001261222.1 YccF domain-containing protein -
  NM059_RS14295 (NM059_14295) yccS 2883121..2885274 (+) 2154 WP_079798559.1 YccS family putative transporter -
  NM059_RS14300 (NM059_14300) sxy/tfoX 2885261..2885866 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  NM059_RS14305 (NM059_14305) sulA 2886083..2886592 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  NM059_RS14310 (NM059_14310) ompA 2886949..2888001 (+) 1053 WP_001670727.1 porin OmpA -
  NM059_RS14315 (NM059_14315) matP 2888073..2888525 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  NM059_RS14320 (NM059_14320) - 2888711..2890471 (+) 1761 WP_000156454.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=709709 NM059_RS14300 WP_001202375.1 2885261..2885866(-) (sxy/tfoX) [Salmonella enterica strain SC2014107]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=709709 NM059_RS14300 WP_001202375.1 2885261..2885866(-) (sxy/tfoX) [Salmonella enterica strain SC2014107]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751