Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PIB33_RS05370 Genome accession   NZ_CP116391
Coordinates   1039643..1040386 (+) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain GXD-20     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034643..1045386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS05335 (PIB33_05335) yhaI 1034971..1035312 (+) 342 WP_009966921.1 YhaI family protein -
  PIB33_RS05340 (PIB33_05340) scoC 1035309..1035920 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  PIB33_RS05345 (PIB33_05345) yhaH 1036098..1036454 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  PIB33_RS05350 (PIB33_05350) - 1036584..1036775 (+) 192 WP_003233238.1 hypothetical protein -
  PIB33_RS05355 (PIB33_05355) trpP 1036849..1037367 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  PIB33_RS05360 (PIB33_05360) serC 1037492..1038571 (-) 1080 WP_014479338.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  PIB33_RS05365 (PIB33_05365) hinT 1038718..1039155 (-) 438 WP_003233231.1 HIT family protein -
  PIB33_RS05370 (PIB33_05370) pptA 1039643..1040386 (+) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  PIB33_RS05375 (PIB33_05375) ecsB 1040379..1041605 (+) 1227 WP_017695369.1 ABC transporter permease EcsB -
  PIB33_RS05380 (PIB33_05380) ecsC 1041625..1042335 (+) 711 WP_029726313.1 EcsC family protein -
  PIB33_RS05385 (PIB33_05385) sndC 1042353..1043543 (-) 1191 WP_029726312.1 N-acetyl amino acid acetylase SndC -
  PIB33_RS05390 (PIB33_05390) - 1043615..1045006 (-) 1392 WP_080287598.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=709691 PIB33_RS05370 WP_003233230.1 1039643..1040386(+) (pptA) [Bacillus subtilis strain GXD-20]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=709691 PIB33_RS05370 WP_003233230.1 1039643..1040386(+) (pptA) [Bacillus subtilis strain GXD-20]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGATTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACAATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAAGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547