Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NMG40_RS23915 Genome accession   NZ_CP101325
Coordinates   5177168..5177725 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LG2-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5172168..5182725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG40_RS23895 pilR 5173444..5174781 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  NMG40_RS23900 thiO 5174827..5175921 (-) 1095 WP_003145981.1 glycine oxidase ThiO -
  NMG40_RS23905 - 5176056..5176565 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  NMG40_RS23910 - 5176671..5177177 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  NMG40_RS23915 pilV 5177168..5177725 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  NMG40_RS23920 pilW 5177722..5178546 (+) 825 WP_009875846.1 type 4a pilus minor pilin PilW -
  NMG40_RS23925 pilX 5178543..5179130 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  NMG40_RS23930 pilY1 5179142..5182633 (+) 3492 WP_180737359.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=709686 NMG40_RS23915 WP_003119423.1 5177168..5177725(+) (pilV) [Pseudomonas aeruginosa strain LG2-2]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=709686 NMG40_RS23915 WP_003119423.1 5177168..5177725(+) (pilV) [Pseudomonas aeruginosa strain LG2-2]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTTAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995