Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NMG40_RS10065 Genome accession   NZ_CP101325
Coordinates   2159593..2160228 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain LG2-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2154593..2165228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG40_RS10050 - 2155299..2156543 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  NMG40_RS10055 - 2156631..2157164 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  NMG40_RS10060 comA 2157295..2159520 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NMG40_RS10065 exbB 2159593..2160228 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NMG40_RS10070 - 2160225..2160665 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  NMG40_RS10075 lpxK 2160665..2161663 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  NMG40_RS10080 - 2161701..2161886 (+) 186 WP_003091157.1 Trm112 family protein -
  NMG40_RS10085 kdsB 2161886..2162650 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NMG40_RS10090 - 2162650..2163114 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  NMG40_RS10095 murB 2163111..2164130 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=709672 NMG40_RS10065 WP_003091163.1 2159593..2160228(+) (exbB) [Pseudomonas aeruginosa strain LG2-2]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=709672 NMG40_RS10065 WP_003091163.1 2159593..2160228(+) (exbB) [Pseudomonas aeruginosa strain LG2-2]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AACAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81